HsaEX0011782 @ hg38
Exon Skipping
Gene
ENSG00000198870 | STKLD1
Description
serine/threonine kinase like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28669]
Coordinates
chr9:133395600-133400529:+
Coord C1 exon
chr9:133395600-133395763
Coord A exon
chr9:133397972-133398055
Coord C2 exon
chr9:133400413-133400529
Length
84 bp
Sequences
Splice sites
3' ss Seq
CTGCCTTCCTGTCCCTGCAGAGG
3' ss Score
12.06
5' ss Seq
TAGGTAGGC
5' ss Score
7.72
Exon sequences
Seq C1 exon
GGCACAGAAGCCATGCATCTGCGGAAGTCCCTCCGCCAGAGCCCAGGCAGCCTGAAGGCCGTCCTGAAGACAATGGAGGAGAAGCAGATCCCGGATGTGGAAACCTTCAGGAATCTTCTGCCCTTGATGCTCCAGATCGACCCCTCGGATCGAATAACGATAAA
Seq A exon
AGGTCATGCAGAAATTCTCTGGCTGGCCCGAAGTCCAGCTCAGGGCCATGAAGAGGCTTCTGAAAATGCCTGCAGATCAGCTAG
Seq C2 exon
GTCTGCCGTGGCCCCCGGAGCTGGTGGAGGTGGTGGTCACGACCATGGAGCTACATGACAGGGTCCTCGATGTCCAGCTGTGTGCCTGCTCCCTGCTGCTGCACCTCCTGGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198870_MULTIEX1-2/5=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(20.0=100)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGTCCTGAAGACAATGGAG
R:
AGGACCCTGTCATGTAGCTCC
Band lengths:
174-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development