RnoEX0087043 @ rn6
Exon Skipping
Gene
ENSRNOG00000027911 | Stkld1
Description
serine/threonine kinase-like domain containing 1 [Source:RGD Symbol;Acc:1307355]
Coordinates
chr3:5494351-5496264:+
Coord C1 exon
chr3:5494351-5494481
Coord A exon
chr3:5494985-5495068
Coord C2 exon
chr3:5496148-5496264
Length
84 bp
Sequences
Splice sites
3' ss Seq
CTATATCCTCGTTCCTTCAGATG
3' ss Score
10.1
5' ss Seq
TAGGTAAAA
5' ss Score
6.02
Exon sequences
Seq C1 exon
GGATGTGATTCACGTCACCGTCATGAGCAACTCCTACATGACCTCCTGTGTTGCTCTGAACATGCAGCGGCAGGTGGTGCCCATCTTCATCACTGACGTACTGCTAGAGGGCAACATGGCCAACATCTTAG
Seq A exon
ATGTCATGCAGAATTTCTCCCATCGACCAGAGGTCCAACTCAGAGCCCTTAACAAGCTTCTGACAATGCCAGAGGATCAGCTAG
Seq C2 exon
GCCTGCCGTGGCCCACAGAGCTGGTAGAGGAGGTCATCACCATCATAAAGCAGCATGAGAAGGTCCTGGATATTCTGCTCAGCGCCTGCTCCCTGCTGCTGCGTGTTCTGGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027911-'12-17,'12-13,14-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PD(3.0=17.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCTCCTGTGTTGCTCTGA
R:
CGCTGAGCAGAATATCCAGGAC
Band lengths:
177-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]