HsaEX0011782 @ hg19
Exon Skipping
Gene
ENSG00000198870 | C9orf96
Description
chromosome 9 open reading frame 96 [Source:HGNC Symbol;Acc:28669]
Coordinates
chr9:136262291-136265657:+
Coord C1 exon
chr9:136262291-136262421
Coord A exon
chr9:136263099-136263182
Coord C2 exon
chr9:136265541-136265657
Length
84 bp
Sequences
Splice sites
3' ss Seq
CTGCCTTCCTGTCCCTGCAGAGG
3' ss Score
12.06
5' ss Seq
TAGGTAGGC
5' ss Score
7.72
Exon sequences
Seq C1 exon
GGACGTGGTGCACATCACCTTCTTGAGAGGCTCCTTCAAGTCCTCGTGCGTCTCTCTGACCCTGCACCGGCAGATGGTGCCTGCGTCCATCACCGACATGCTGTTAGAAGGCAACGTGGCCAGCATTTTAG
Seq A exon
AGGTCATGCAGAAATTCTCTGGCTGGCCCGAAGTCCAGCTCAGGGCCATGAAGAGGCTTCTGAAAATGCCTGCAGATCAGCTAG
Seq C2 exon
GTCTGCCGTGGCCCCCGGAGCTGGTGGAGGTGGTGGTCACGACCATGGAGCTACATGACAGGGTCCTCGATGTCCAGCTGTGTGCCTGCTCCCTGCTGCTGCACCTCCTGGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198870-'15-16,'15-15,16-16
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PD(3.0=17.8)
A:
NO
C2:
PF050048=IFRD=PU(17.5=52.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAAGTCCTCGTGCGTCTC
R:
ACATCGAGGACCCTGTCATGT
Band lengths:
171-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)