BtaEX6047293 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004140 | STKLD1
Description
serine/threonine kinase-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28669]
Coordinates
chr11:104352145-104354620:+
Coord C1 exon
chr11:104352145-104352275
Coord A exon
chr11:104352938-104353021
Coord C2 exon
chr11:104354504-104354620
Length
84 bp
Sequences
Splice sites
3' ss Seq
CCCTGCCCTGTCCCCTGCAGAGG
3' ss Score
10.99
5' ss Seq
TGGGTAGAG
5' ss Score
-1.16
Exon sequences
Seq C1 exon
GGACGTGATTCACTTCACCTTCGTGCGCAGCAACTTCCGGTCCTCCAGCCTCGCCCTGGTTCTGCGCCGGCAGGTGGTGCCCGAGTTCATCATTGACATGCTGCTCGAGAGCAACGTGGCCAGCATCTTCG
Seq A exon
AGGTCATGCAGAACTTCTCCAGCCGCCCTGAAGTCCAGCACAGGGCCCTGAAGAGGCTCCTGAGGATGCCTGAAGACCAGCTGG
Seq C2 exon
GTCTGCCGTGGCCAGAGGAGCTGGTGGACGTGTTGCTCACCGTCATGAAGCAGCACCAGAGGATCCTGGACATACAGCTGTGTGCCTGCGCCCTGCTGCTGCGCACCATGGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004140-'11-12,'11-11,14-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PD(3.0=17.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCACTTCACCTTCGTGCGC
R:
CTGCTTCATGACGGTGAGCAA
Band lengths:
177-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]