MmuEX6099788 @ mm10
Exon Skipping
Gene
ENSMUSG00000049897 | Stkld1
Description
serine/threonine kinase-like domain containing 1 [Source:MGI Symbol;Acc:MGI:2685557]
Coordinates
chr2:26946597-26949428:+
Coord C1 exon
chr2:26946597-26946727
Coord A exon
chr2:26947244-26947327
Coord C2 exon
chr2:26949312-26949428
Length
84 bp
Sequences
Splice sites
3' ss Seq
TCCATTCCTTCTCCCTGCAGATG
3' ss Score
13.7
5' ss Seq
TAGGTAAAG
5' ss Score
6.93
Exon sequences
Seq C1 exon
GGATGTGATGCAAGTCACCTTCATGAGCAACTCCTTCAAAAGCTCCTCTGTTGCGCTGAATATGCAGCGGCAGAAGGTCCCCATCTTCATCACTGACGTGCTGCTTGAAGGCAACATGGCCAACATCTTAG
Seq A exon
ATGTCATGCAGAATTTCTCCAGTCGACCAGAGGTCCAGCTCAGAGCCATTAACAAGTTGTTGACAATGCCAGAGGACCAGCTAG
Seq C2 exon
GGCTGCCATGGCCCACAGAGCTGCTGGAAGAGGTGATCAGCATCATAAAGCAGCATGGGCGGATCCTGGATATTCTGCTCAGCACCTGCTCCCTTCTGCTGCGTGTTCTTGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049897_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PD(3.0=17.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTCTGTTGCGCTGAATA
R:
GCAGAATATCCAGGATCCGCC
Band lengths:
168-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types