GgaEX7009804 @ galGal4
Exon Skipping
Gene
ENSGALG00000003175 | STKLD1
Description
serine/threonine kinase-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28669]
Coordinates
chr17:6894501-6896421:+
Coord C1 exon
chr17:6894501-6894631
Coord A exon
chr17:6895271-6895354
Coord C2 exon
chr17:6896305-6896421
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTTTTTTTAACATAGAAT
3' ss Score
7.91
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
Exon sequences
Seq C1 exon
GGATCTGATCGATGTGCCATTTATTGGGGAATGTCTGATTGTTGCTAGTTCATCTGTAATAAAACAGAAGAAGTCTTTGGCTTCCTGTGTAATAGATATGTTCCTTGAGGGAGGAATCGGAAGCATTCTAG
Seq A exon
AATTCATGCAAGCTTTCTGGGATGTAGAAGAAGCACAGGCTAAAGCCATGCAACACCTGGCCCACTTTGTAGGAGATAAAAGTG
Seq C2 exon
CTCTGCCCTATCTGCTAACGTTCACAGAATTGATTGTTTTTGCCTTGAAGACTCATACAAATTGTTTCAAGTTACAAGTAGATGGTTGCAGTTTATTGCTTGAAGTTCTCAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003175-'12-16,'12-15,13-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PD(2.9=17.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGTCTTTGGCTTCCTGTGT
R:
ACTTCAAGCAATAAACTGCAACCA
Band lengths:
169-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]