HsaINT1045904 @ hg38
Intron Retention
Gene
ENSG00000144357 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:HGNC:30467]
Coordinates
chr2:169927320-169928868:+
Coord C1 exon
chr2:169927320-169927407
Coord A exon
chr2:169927408-169928728
Coord C2 exon
chr2:169928729-169928868
Length
1321 bp
Sequences
Splice sites
5' ss Seq
CATATCCTT
5' ss Score
-20.06
3' ss Seq
TCTTGACATATATATCATATTCC
3' ss Score
-4.75
Exon sequences
Seq C1 exon
GAATGTCTGATGATGAGATTCTCAGGGCCGAGATGGTAGCCCAGCTGTGTATGAATGACAGGACACACAGTTCATTGCTGGACCTCAT
Seq A exon
ATCCTTTTAAAATTTTACTTTCTGTTAGTTGCAGGATCTAAAATAAGTATTTTTTATGATTAATAGTTTATCAATTTTTTGATTAATTTTTTTTCAAAGTTGAAAAATAATATAGAAAAAGAAGAACACCAGTTGTGTGCTCAAGTATGTATTCAAGCCTGGTGACTGTTTTTTTTTTTTTTTAACCTCCTGTTATTACCTCTTGGGGAACTCTTCTTAGACTTTAGGGTAGATTTCAGGACTGAATGATGGCTTTGGCCACCCCAGCATTTAACCTCCTAGTGGACAGCATTACTGAACGTTTTATAAAAGGCAGCTAGGTCCATTTTGTCTGTGTAGCCAGGATGCAATTCATGGTTAACAGTTAAAGGTATACCTTACGATTATTATTACCAGGATTTTAAACATTTTGAGGGTTTTTCTGTAGAATTTGGTCTTAAAGGATTTTTGAATTTATAGATTTTTGTGTACAAACAGGGAACCTGTGGTTCTTTGTATAGGACTGAACATACAATGAGAATCTGATTATCTTTTTAAGTTAATGTTAATAAAATTTTACACAAAGATTATCAAGTAATTTTGTGATAAAAATTCTGGCCGAATTTAGTATTTGTATATCTTATGACTATGTTTGGAAGAATTGGCTAAACTTTTTATTTTGTGAAATAAGTCCTATTAGAATGCCTGTTTGACAACCTTGATTTTTGTAAGCAGCCTCAATTTGATACTGTCTGATGATTTCCTTCAGTCATTATGAACTATGTGTCAGTGCTATTATAGAGTAAAAACGATCTCTGTGTCTTTCAATTTTAAAGATTTATGTGCTTTAATGTGAGGAGAGAATCTTTTTGGTTTGCCTCTTTGCTTATATTTGCTTAGTATTTTTTTCTTTGGGGATGAAATTTTGTGTTTTTGGAAAAACAATCTTTGCTCATAAAAATCTTGGCTAATTTTTCACAAGTTCTTTCTGTTTTTTAAGGAAAAGTTATTTACAAAATGGTAAAAATGAAGACACATTTTTAAAAGTTTTTCTATCGTTTTCTGAAATTTGATAAATTTATTTCGGGGAAAATATACCTGGGAACTACTGCAGCATACAATTTATTAGTAGGCTCCTAGATTAAACATATTTTCAAAAATCACAATTAAAAACAGTTATTATTGATCTGTTGTATTATATAGCCCTCTTGTGGCCAGCTTTGTATATTACAACCAATTACTATTTGTCTACTTCAGCAAAATGAGAAACTAGAGTACCTTGGAAAGGCTATAAATCTGGCTTTTTGTTACTAATATTTTTTTCTTGACATATATATCATAT
Seq C2 exon
TCCAGAAAATCCTAATCCCAAAAGTGGCATTATTCCAGGCAGTTACAGCTTTGAATCAGTTTTATCAGCTGTAGCTGATTTTAAGGCTCCTGTTTTTGAACCTGGAGGTTCTATGCAACAAGGCATGTATACTCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144357:ENST00000272793:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=NA C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTGATGATGAGATTCTCAGGG
R:
TGGGAGTATACATGCCTTGTTGC
Band lengths:
222-1543
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains