HsaINT1047313 @ hg38
Intron Retention
Gene
ENSG00000167384 | ZNF180
Description
zinc finger protein 180 [Source:HGNC Symbol;Acc:HGNC:12970]
Coordinates
chr19:44497284-44500522:-
Coord C1 exon
chr19:44500198-44500522
Coord A exon
chr19:44497373-44500197
Coord C2 exon
chr19:44497284-44497372
Length
2825 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
TGGGGCTTCTCTCAGTGCAGCTC
3' ss Score
3.15
Exon sequences
Seq C1 exon
ACAAGAGCAGCCATTGTCCCGCGCGCGGACGCTTGCTGTCGCCGAGCAGCTCGGCCCTTCAGACTTAACCCCCAGCGGCCTTGCGGATGCTGACTAGGAGAGGGGACCGAACTAGCTTAACCCGAGTCGGCCGTGTTGCAGAATCGGGGCAGGGGGTTGCCTAACCCGAGTTCGTCCTGCCGCAGAGCCGTGCTAGGCACTGAGGCGGTGACAGGCCCAGCCTGGGCTGCGGGCCAGCGGACGCCCAGGTTGGTAGGGGCGTGGGGCAGCGCTTGGTGTCCGATGCGCGCATGCGCAGGGTCTACGCGGGAAGCTGGAAGCGGTG
Seq A exon
GTGAGTGTAGCGGGGAGACCTGGTATCTGTGCGGGTGGCGCTTTAGCCTCGGGTCACCGGGGTTGATGGAGTTACTGATACAGCTGTATATTCCGCGACTGTCCTCTGCGTGCATGCGCGGGTGCTTGGTCAGGTGGTGCTCTTGTCTGGGGCCTGAGGATGCCCAGGTTGCTGGAACACAGGGCACATGCATTGATGTAAGGGGACATCTTGAGAACTCCCCTCCTCCAATGCCGGGCTTATTTAGTGGAGGCCTGAGGATGTCCGGGTTGATGGAGTGCTCCATTGCAGATTGTGGTTTCTGGAGAGGAGGGGCTGTGCCACTGTCCCTTTACTCTTGATCAGGTATTTGGGTAGGAAGCAAAAGGTTGTAGGTAAGATTCCGAGCAGGTGGCTCTGGGCCCCTAGAGCAGACAACGCGCTTCTCCAAGGTCTGGGGGCGCTGTGGTTGGTGGAGAGACCAGATTGGAGTTGCAGATTCTTGTGCCAGAAGAGGCAGTGTTGCTAGTGAACCCTTGGTGGGAATTACCCATGGGCAGCAAACTCCCAGGCTGAAGGAGGGTATCAGGGCCTAGAAACAGGTTCTGGGCAGAGGGCCCCCTGCACGTCCTGGGGGTGTCTGAATGGAAAACAGAAACTTGAACTGATAGTAGGGACCTATGTAGGATAGTGCAGAGCTCTAGAGCATTCAAGATGGGCAGAGACTCCGGGTTGGAGATACAGAATTTAAGTCCAGGAAGGACAGAGCTGCAACAGCTGCCATCAAATTGGTAGCTGGGGAGGAAGCAGTATGTTGCCAGCATCGTTATGAAGCAGGTGTTGCTGAGACCTTTACTTGGGTACGCTATTTGCAGGCGTGAGAATGTGCAGGTTAGTAGAGGGACAGAGCCTGTGCTGCAGATTTGGTCCCGGGAAGAGCTGACTGCACAACACCCAGGCCGTCATGATTGGGCAAGAGAAGGACAAAGGGCCCAGTTCCCATTGAGCTGCTGTATCGTAGGCTCGAGAACCCCCACGCTGGCGAGTGCCCAAGTCCTGGGGCTGATTATGGAGCTGTATGCTCAAGCTACTGTTTAGTTGTTGTAGTGTCCTGGCTGCGGGCAAATAGTGGGGCAGTTGACCCCAGAACCTACACAGAGGCTGTGGGTACCTGAGATGTCCCAGGCAGGTTGAGACACAGGGTGAGGGATGTAGATTGTTGACTCAGGAGCATGGTGTGCCCCCAGACGGGCAGAGGAGCCAGGTCCTGGATGCAGATTGTGAGCACGAACCTGCTCTGTGGCTGTATCAGTAGGAGGGAGTCTAGGTGGGTGGCCCGTGTGCAGTGGCTGTGGAATAGAGGCCTGGGGGCTCCAGTTTGGATCTGGTCTTAGGAGGCACGGGGCTGCTCCAGCAACACTCTGCACGTGTGCTGGCATTTGGGCAGATTGGGGAGGCATGGGCAGTCCTAGGACCCTGATTCTGCCTGAGGATGCCCAGGTGTGTGGGGGGGAGCAGCTGCAGAGGGGCGGGACTGTGTCAGGCACCCCTTGTGCACACACACCGGTGTTTGGTTGGGAAACAGGAGGCCGGAGATGAGTTTTAGACAGAGGGTGCTGGGGTCTTTGTGTGATTGGAACCCTGATCACAGCCTGATGGTGCCCAGTTTGGTGGAAAGACAGGATCTTCCTGAGCCACAGGTGCCCCCGAAAGATGTTTGGTCAGAATCTGGGCAGGTGTGGCTCAAGCAGGGGGCTGTGGAGTAAGGTGGAGGAAACAGTTTGGGTGCAATTTCAGGAAACAGCTGCATTGTGAACCTACGCTATGCTGCGTGAGAATATGGTGGGAGCAGGGGAGAGAGTAAGTGGGAGAGATGGAGTGCAGAGGGTGGGGTGCCTAGGGTAGGATTTGCCCTCTAGTCTTGGATCCCAAAACACCTAGTTGGTACAGAGGCACCTGAGCTTCTGAGACATGTATTTAGAGCCTGGGTAGGGCTGCTTTTGTCTGGCTTGTGCTGGTGTCTGTTGGAGGCCCCCAGCCCTATGCAGGCCTTGTTGTAGTTTCAGGCCTGAGTATACCCAAGTTGGTGGAGGGACTGGTTTAGAGCTACAAATTCAGGGCCTGGGAGGGTGTTAGGGTGGGAATCTGGCTGGTGCTGTTCGAGTAGGAGCCAGTGGACCCCAGAAGTGTGGAGGGAACAGGATGTGGGTATAGCTGAGCTCTGTGCATAAATGCTTGGCTATTTGAGCAGGATGTGGGTGGCCCTCTGTGCTGAGTTGCTGGAGGGACAGGTCTGGCTGATGGAACGGTAGGATCAGTCTTAGTTGTTGAATCAGTTCCTGGGAGCAGTGGAGCTGTGTCACCAGCTTCATGCAGTTAGGCAGTGAGTGTGATTCTGGCCCTAGGAAGAAGTGCTGGTTTGGGGCTGTAGATTGAGGTTGGTAGGGGTAGGATGGGGTGAACACCAGGGGGTCCTCAATATGCCTGATATTTGTGGGGATCCCAGGGCCCAGTGAATAGGAGAGGGATGGACTGGTGCTGCAGACTTTGGTGGTGGGCAGAAGGCCATGTTGGGCACAAGCTGGGCTTACAGGTAGATGGTCCAGGGGCCCAAGATGGTGGAGGAACCAGGTTGGAGCTGCAGAAACTTGACCTGGGAGAGGGACTGAGGGACTCTCAGTACATACACAGGTATTTGGGCAGGAAGCTGGCAGGAACCTCCAGAAGTGCATTTGCTATGGGAATGCATCCTGCATCCTGGGAGCAGGGGCTAATGGGGGTGGGGGGCCCAGCGGTTCCGGCAGACCTACATCTTCATGCTGTACTTGGGGCTTCTCTCAGTGCAG
Seq C2 exon
CTCAGGACCTCAGCACCCTGCTGTGCCTGGAGGAGAGCATGGAAGAGCAGGATGAGAAGCCCCCAGAGCCCCCGAAGGTCTGTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167384:ENST00000221327:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.617 A=NA C2=0.772
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains