Special

MmuINT0178672 @ mm9

Intron Retention

Gene
ENSMUSG00000057101 | Zfp180
Description
zinc finger protein 180 [Source:MGI Symbol;Acc:MGI:1923701]
Coordinates
chr7:24866963-24870525:+
Coord C1 exon
chr7:24866963-24867257
Coord A exon
chr7:24867258-24870444
Coord C2 exon
chr7:24870445-24870525
Length
3187 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
AGCTGCTTTTATTTATGCAGCTT
3' ss Score
6.14
Exon sequences
Seq C1 exon
GAGTGTGTGTGTGTGTTTGTATGTGTTTGTGTGTGTGCGTGCGTGCGTGTGAGTGTGTGTGTGTGTATGTGTGTGAAGGCGTCTTCTATGGCTCAGCTTTGTGGCTGGGCTCAGTCTACACGGAGCGACCTGGCGGATGCTGACTCGAAGTGGAAGCCAGACCCCCGCCACTCGAGTCATGCCGGGTGTGCTTCAGGATCGGGGCAGGAAGCGGTGAGCACAGTTTCGTTCTGACGCTGAGTCGTGAGTGGCTCAGACCCGCCCCGGTCCTCACCACGGGCTCACGGACGTCCAG
Seq A exon
GTTGGTGTTAGATGTGGGACGCTTACAGTGGTCGATGTGCGCATGCGCAGGGTCTAGGCGGGAATCTGGACGCGTTGGTGTCAGTGACTTGGGGTTCCTGTGCCTCAGAATAGGACTCAGGGTCTCGGGAGGCTGTAAAGAGTGCACAGTTGTGCGCATGCGCGGATGGTTGGTTTTGTGTGGTGGGACTGTGGGACCGAGGATGTCCAAAAGGATGGAAAACAGGGCCTAGGCAAAGGGCAGATAATTGAAAGGCCCGAGGGGACACTAAGGTGCCTTGCGTTTTAGACAAAAAAGTTTTAAAAGAGGTATTATCGCCACAGAGAGACATTGTGGCGGGGCCTCTAAGGTGACAGGGTGTGTCACCAACAGCTCCTAATAACTGACTCTGGTGGCCCTAGGTGCATATGCAGAATCAGCTCTGAGGGTAGGGAGAGACCCTGAGGGTAGGTGCAGAGGTGGGTGTGACCTGAGCAGTTTCCTCTGTGTACGTACAAAAGTACCAGGAACTCCCCTCCTCCCCTGCGTATTTAGTGGAGAGCCTTCCAATGCACAGACTCTTTTTCCCAAAGAGAGGAACCATGCCACTGTTTCTGTACTAGATCTAAGCCCACACTGTATTCGTGAGCAAGTGTTGGTGTCGGAATCACCAGCCTACGTTCTGAAGACGTGGTTCTCCTACCTGGGCAGACACTGTTCTTGCAAGCCTGGGGGTGTCCTGTTTGTTGGAGATGTATGTGGCTTCTGTTCCTAGACCAGGCATGACAGCCAAGCAGAGCAGTGGCCGCTGTTTAGCCCAGTGAGCCAGTGGGTTTATTGTTGTTCCCTACGGAAGTATGAGTGAAGGGTTTCTTACAGGAGCAGGATGAGTCAGCTATGGCACTGAAAAGCCCACGGGAGTGATGACTCAGGGAAGCTGCGTCTCTGGAGGTGCCTACAAGACTCCAAAGCAGCTCATCTGGGCAGGGTACCTCCTCCTCAGCCTTCGCTGTTGCATGTATAATCTTAAGGAAGGGTGTGTGTGTGTATCTTTAAAGTTTCAGCTTCTGAGATCTTTTAAGTTTTGTTTGCTTCCTGAGTCTTAGGAGCCTCCCTTCTCCTTCTAGGAGGGAGCATTTCGATTCGGAGGAAATGGGTTCACACTAGAGCAGCCTGGAGGTCCTGGTTCTTGAACCAGGAGACCCAGTATTGTTTTCAGTTAATCAGTCCTTTCGACAGTCAAGTACCAGATGGAGGGTGTTAGGCAAGGGCCTAACAGAGGATTCTAGGCAGAAGGCCCTGTGCATGTCAGTGTATTCAATTAGAGAATCTGGAACTGGCACCTGAAACCTGAACACCTTAGAGTTCTTAGATGTTCAAGTTGGGTAGAAACTCCAGCTTGGAGGTAAGGAACCTATGCTTTAAAAGGCTGCCTTCTGGTTGGCAACTGGCTGGGAGAAGGCAGATGCTGTAAGCATCTTTACAGAGTATGTGTTGCTAGGATCTTTGCTGTGGCCTGTTCTGCCTTGAAGCAAGAGAATGCCTGCATTTATAGGAGAGCGGGGTGGAAGACAGGTCCCTTGGCTCTAGCCTAAGTTTGAGGACACCTTGGGAGCCAAGTGTTGAGGACCTAGGACTGGTTCTGGAGCTCCGTGCTCAGACTTAGGTAATGGTGTATTTTAACTACAGCTCTGCAGACATGCAGAACTGGTGGCCTCAGGACCATTGTGGCAGCTGTGACTTGGAGCCACAAGGGGACACAGAGTCCTATAAAAATCCGCCTAGAGCTGGGGTGTAACTCAGCTGGTTAAGTGCTTGCCTAGCACAAAGCCCCAGGTTCCATTTCTGGCACTTCATAAATCCGGTCTGGTGGCACATGACTAAAAAAAGCAGTACTTGGGAGGTAGAGGCAGGAGGATGATGCGTGTGAGGCTAGCCTAGACTACATGAAACCCTGACTCAAAGGATAAGGAATCAAAACCAAAACAAGGAAGAACCCCAGATGGGCGGAGCACCCAGGTCCTGAATGCAAATCCTTCATGGGAACCTGCTTGGATGAAAGGTGTGTGCCACCGTGCCCTGCTAGAAATGCACTTTTGACACATAGTGCTGGGATCTTGGTGGATTTTGCTGTAATCAGCACCAGTTGATTCCCAAGTGTAGGGGAAGACAGGGTCTCCCTGGCATTCAGGTGCCCAGGAAGGTGTACAGCAGGAATTACGCAGGTTGAGACTCAAGCTGGAGCCTGGTGGGTGGAGGGAAGTAGGTGGGACTGTACATTAGTGCTGGGGTGAGAATCAGGGGGTGGGGTAGTGAGAGAAAGATGGGGGCAGAGGATGTGGCATAGTTGGTAGAGTGCTTGCCAGTGTGCACAGAACACTGGGTTCCAGCCTTAGCACCACATGAGCAGCAAGGGAGTATGGAGGGGTTGGTGCCTCAAGTGGGATTGGTCAGCTGCCACCCTGCTTTCCAAGTTCGTGACATCAGATGACACAAAGACAGCTGAGCTGCAAAGGTACAGGGTCTGGTCCTGGCAGAGGCTGATATGTGCTGTGGCTGCCAGAGGTCCCCAGTTCCACGTGGGCCATTGTGTCTTTAGTTCCAAAGAGCCCTCCAGACTGATAGAGGAGGAAATCAGGTTCAAGCTACAAATTCAGAGCCTGAGGGTTTGGGTAAGAATCTGAGGAAGAGTCTGGTTGGGTGGGGGAAGGAGGGGCCTGGCCTGGCCCTGGCGGTTTGGGTAGGAAGATGGAGGCTCTGCATGTTTGCTGATGAAAGAACAGTGTTCTCAATGAAATAACTATCTGGAAAGGCTGGGGCTGTGTCCTGAATTTCCTTTATTTGATCAGTGGCTATATGGTTCCTAGGCCTGGAAAGAGATTGTCTTGAAGTTGCACACTCAAGCCAGTAAAGTACGTAATACTAGGGGGTTCTTTAAGTGCTGGGTGTTTGTGGGGCTCCCAAGACCCAATGAATGCCCTGATTGGAGCTGCACATTTAGGTACTGGGCAGATGGTCATGTTTTGAGCATGAGGTGGGCTTACAGGGTAGTGGGGATGGGGGAACAAAGTGGAACTGCAAAGATTTGACCTAGAGCAGCAACTCAGGGATTCTTGGTTAATGTCCAGTTGGGGCATTAACTGCCAGGGGGCAGGCTGGGCTGGAGAGCGACAGTGCAGGCTATGCAGAGCTGCTTTTATTTATGCAG
Seq C2 exon
CTTGGCACCACGCCACACCTGGAGGAGACCATGGAGCAACAAGATGATGAGTCCCTGGAGTCCCTGCAGGCCTGTGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057101-Zfp180:NM_001045486:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
5' UTR





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=NA A=NA C2=0.765
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NA

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000064611, ENSMUSP00000064611f5030A
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr19:44497373-44500197 
ALTERNATIVE
HsaINT1047313
(ZNF180)
Human
(hg19)
chr19:45001425-45004326 
HsaINT0186328
(ZNF180)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr18:52655179-52656627 
BtaINT0164963
(ZNF180)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"