HsaINT0186328 @ hg19
Intron Retention
Gene
ENSG00000167384 | ZNF180
Description
zinc finger protein 180 [Source:HGNC Symbol;Acc:12970]
Coordinates
chr19:45001336-45004574:-
Coord C1 exon
chr19:45004250-45004574
Coord A exon
chr19:45001425-45004249
Coord C2 exon
chr19:45001336-45001424
Length
2825 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
TGGGGCTTCTCTCAGTGCAGCTC
3' ss Score
3.15
Exon sequences
Seq C1 exon
ACAAGAGCAGCCATTGTCCCGCGCGCGGACGCTTGCTGTCGCCGAGCAGCTCGGCCCTTCAGACTTAACCCCCAGCGGCCTTGCGGATGCTGACTAGGAGAGGGGACCGAACTAGCTTAACCCGAGTCGGCCGTGTTGCAGAATCGGGGCAGGGGGTTGCCTAACCCGAGTTCGTCCTGCCGCAGAGCCGTGCTAGGCACTGAGGCGGTGACAGGCCCAGCCTGGGCTGCGGGCCAGCGGACGCCCAGGTTGGTAGGGGCGTGGGGCAGCGCTTGGTGTCCGATGCGCGCATGCGCAGGGTCTACGCGGGAAGCTGGAAGCGGTG
Seq A exon
GTGAGTGTAGCGGGGAGACCTGGTATCTGTGCGGGTGGCGCTTTAGCCTCGGGTCACCGGGGTTGATGGAGTTACTGATACAGCTGTATATTCCGCGACTGTCCTCTGCGTGCATGCGCGGGTGCTTGGTCAGGTGGTGCTCTTGTCTGGGGCCTGAGGATGCCCAGGTTGCTGGAACACAGGGCACATGCATTGATGTAAGGGGACATCTTGAGAACTCCCCTCCTCCAATGCCGGGCTTATTTAGTGGAGGCCTGAGGATGTCCGGGTTGATGGAGTGCTCCATTGCAGATTGTGGTTTCTGGAGAGGAGGGGCTGTGCCACTGTCCCTTTACTCTTGATCAGGTATTTGGGTAGGAAGCAAAAGGTTGTAGGTAAGATTCCGAGCAGGTGGCTCTGGGCCCCTGGAGCAGACAACGCGCTTCTCCAAGGTCTGGGGGCGCTGTGGTTGGTGGAGAGACCAGATTGGAGTTGCAGATTCTTGTGCCAGAAGAGGCAGTGTTGCTAGTGAACCCTTGGTGGGAATTACCCATGGGCAGCAAACTCCCAGGCTGAAGGAGGGTATCAGGGCCTAGAAACAGGTTCTGGGCAGAGGGCCCCCTGCACGTCCTGGGGGTGTCTGAATGGAAAACAGAAACTTGAACTGATAGTAGGGACCTATGTAGGATAGTGCAGAGCTCTAGAGCATTCAAGATGGGCAGAGACTCCGGGTTGGAGATACAGAATTTAAGTCCAGGAAGGACAGAGCTGCAACAGCTGCCATCAAATTGGTAGCTGGGGAGGAAGCAGTATGTTGCCAGCATCGTTATGAAGCAGGTGTTGCTGAGACCTTTACTTGGGTACGCTATTTGCAGGCGTGAGAATGTGCAGGTTAGTAGAGGGACAGAGCCTGTGCTGCAGATTTGGTCCCGGGAAGAGCTGACTGCACAACACCCAGGCCGTCATGATTGGGCAAGAGAAGGACAAAGGGCCCAGTTCCCATTGAGCTGCTGTATCGTAGGCTCGAGAACCCCCACGCTGGCGAGTGCCCAAGTCCTGGGGCTGATTATGGAGCTGTATGCTCAAGCTACTGTTTAGTTGTTGTAGTGTCCTGGCTGCGGGCAAATAGTGGGGCAGTTGACCCCAGAACCTACACAGAGGCTGTGGGTACCTGAGATGTCCCAGGCAGGTTGAGACACAGGGTGAGGGATGTAGATTGTTGACTCAGGAGCATGGTGTGCCCCCAGACGGGCAGAGGAGCCAGGTCCTGGATGCAGATTGTGAGCACGAACCTGCTCTGTGGCTGTATCAGTAGGAGGGAGTCTAGGTGGGTGGCCCGTGTGCAGTGGCTGTGGAATAGAGGCCTGGGGGCTCCAGTTTGGATCTGGTCTTAGGAGGCACGGGGCTGCTCCAGCAACACTCTGCACGTGTGCTGGCATTTGGGCAGATTGGGGAGGCATGGGCAGTCCTAGGACCCTGATTCTGCCTGAGGATGCCCAGGTGTGTGGGGGGGAGCAGCTGCAGAGGGGCGGGACTGTGTCAGGCACCCCTTGTGCACACACACCGGTGTTTGGTTGGGAAACAGGAGGCCGGAGATGAGTTTTAGACAGAGGGTGCTGGGGTCTTTGTGTGATTGGAACCCTGATCACAGCCTGATGGTGCCCAGTTTGGTGGAAAGACAGGATCTTCCTGAGCCACAGGTGCCCCCGAAAGATGTTTGGTCAGAATCTGGGCAGGTGTGGCTCAAGCAGGGGGCTGTGGAGTAAGGTGGAGGAAACAGTTTGGGTGCAATTTCAGGAAACAGCTGCATTGTGAACCTACGCTATGCTGCGTGAGAATATGGTGGGAGCAGGGGAGAGAGTAAGTGGGAGAGATGGAGTGCAGAGGTTGGGGTGCCTAGGGTAGGATTTGCCCTCTAGTCTTGGATCCCAAAACACCTAGTTGGTACAGAGGCATCTGAGCTTCTGAGACATGTATTTAGAGCCTGGGTAGGGCTGCTTTTGTCTGGCTTGTGCTGGTGTCTGTTGGAGGCCCCCAGCCCTATGCAGGCCTTGTTGTAGTTTCAGGCCTGAGTATACCCAAGTTGGTGGAGGGACTGGTTTAGAGCTACAAATTCAGGGCCTGGGAGGGTGTTAGGGTGGGAATCTGGCTGGTGCTGTTCGAGTAGGAGCCAGTGGACCCCAGAAGTGTGGAGGGAACAGGATGTGGGTATAGCTGAGCTCTGTGCATAAATGCTTGGCTATTTGAGCAGGATGTGGGTGGCCCTCTGTGCTGAGTTGCTGGAGGGACAGGTCTGGCTGATGGAACGGTAGGATCAGTCTTAGTTGTTGAATCAGTTCCTGGGAGCAGTGGAGCTGTGTCACCAGCTTCATGCAGTTAGGCAGTGAGTGTGATTCTGGCCCTAGGAAGAAGTGCTGGTTTGGGGCTGTAGATTGAGGTTGGTAGGGGTAGGATGGGGTGAACACCAGGGGGTCCTCGATATGCCTGATATTTGTGGGGATCCCAGGGCCCAGTGAATAGGAGAGGGATGGACTGGTGCTGCAGACTTTGGTGGTGGGCAGAAGGCCATGTTGGGCACAAGCTGGGCTTACAGGTAGATGGTCCAGGGGCCCAAGATGGTGGAGGAACCAGGTTGGAGCTGCAGAAACTTGGCCTGGGAGAGGGACTGAGGGACTCTCAGTACATACACAGGTATTTGGGCAGGAAGCTGGCAGGAACCTCCAGAAGTGCATTTGCTATGGGAATGCATCCTGCATCCTGGGAGCAGGGGCTAATGGGGGTGGGGGGCCCAGCGGTTCCGGCAGACCTACATCTTCATGCTGTACTTGGGGCTTCTCTCAGTGCAG
Seq C2 exon
CTCAGGACCTCAGCACCCTGCTGTGCCTGGAGGAGAGCATGGAAGAGCAGGATGAGAAGCCCCCAGAGCCCCCGAAGGCCTGTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167384-ZNF180:NM_013256:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.542 A=NA C2=0.885
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)