BtaINT0164963 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006805 | ZNF180
Description
Bos taurus zinc finger protein 180 (ZNF180), mRNA. [Source:RefSeq mRNA;Acc:NM_001075644]
Coordinates
chr18:52655089-52656690:-
Coord C1 exon
chr18:52656652-52656690
Coord A exon
chr18:52655155-52656651
Coord C2 exon
chr18:52655089-52655154
Length
1497 bp
Sequences
Splice sites
5' ss Seq
CTGGACCTC
5' ss Score
-14.86
3' ss Seq
GGATCTCAGGTCCCTGCCTGTGC
3' ss Score
-9.56
Exon sequences
Seq C1 exon
AGCGGTGGTGGGCACTGAAGCTGTGACAGGCCCTGCCTG
Seq A exon
GACCTCGAGCTGGTGGACTCTCAGGTTGGTGAGGGGGCGGGGCAACGCCGGGTGCCTGGTGCGCGCATGCGCAGGGTCTGGGCGGGTGGCTGGGACGGAGTATGTGGGTGGGCGATCTGGGACCTGCGTGGGCGGTGCTTCAGCCTCAGATTACAGAAGTTGGTGGTGATGCTGGGGCAACTGCAGATCCCGGTACTGTGCTCTGCGCGCGTCCCAGGTGCGACGCACGTAGGGGCCTGGGGAGATTGGTGGAGAAAGCGGTTTGGGTGCAGGTTCAGGGTACAGCTGCATTATGAACTCACACTGTACTGTTTGAGTGAGGATCCAGGGGTGCTGAGGGATGGGTAAGAGAGAGCAATGGGGCAGAGATGGCTTGTGGAGGCGGGGATTTGCCAGGAACTGTTCGAGTCTCAGACCCAGAAACTTCGAGCCGGTACGCAGACAACAGGTCCACATTAAGGGCCTAGGAGGGGCTAGCAGGTACTATGCTTGTCAGGGCGCCCCCCAGCCCCATGCTGGCCACGTTTTGGATTCAGCGGTGAGGACACCGGGTTGATGGGGGGCCCAGGAGGATTTTGAGTGGTGGGGAGTCTGGGCTGGTACTCTTCTGGTAGGGGCCCACCGATCCCAGGAGGGAGGAGGTCGTGGGTGCAGCTGAGCTCTGTGCGTATGCTTGGCTTTTTGAACAGGAAGTGAGAGGCAATCGCCAGGTGCTGGAGGGTCAGTGGAAGGATAGGATCCTGGGAGGGGCACGGCTAAGTAATGAACTTCACGCAGTTAATCAGGTATTTGACTGTGGATCATCAAGCCCAGGGGGCTACATGGTGGCTCAGTGGCTGCAGTGCAGGAGACAAAGGTTCGATCCCTGGGATGGGAAGATGCCCTGGAGAAGTGAATGGCAACCCACTCGAGTATTCTTCCCTAGGAAATCCCATGGACAGAGGAGCCTGTGGGTTTACAGTCCATGGGGTTGCAAGAGTTGGACATGACTTAGCAAGTAAACAACAACAACATCAAGGCCAGAGCCCTGCTCTTTGCCTTAGGAAGAAGTGCTGATTTGGGTCTGCAGATTCAGGTTGAGGGTGGCAGGTGGACACTAGGGGATCCTCAGTGTGCTGGGTGTTTGTGGGGGTGGGGGGTGTCCCAGGATCCAGTGGGACAGAGACTGATTCATGCTGCAGATTTTGGTGATGGGTGTAAGGTGGAGCTCGGGCACATGGTGGGCTTCCAGGTAGGTGGCCCAGAGGCCCCAAACACTGGACCATCCAGTGGAACTGCAGAGTCTTGGCCTGGGAGAGGGACTAGCGACTCTAGGTACAAGCATAGCTATTCAGGCAAGACTCTATCTGGGCAGGAGCTTCTAGAAACACAGTTGCCATGGAGACTGCATCCCCGAAGCAGAGGCTGATGGTGGGGTGTGGCCCACAGTGGACCTACAGGAGGATGCTATACTCAGGGCTTCTCCTCTTGCAGCTCAGGATCTCAGGTCCCTGCCTG
Seq C2 exon
TGCCTGGAGGAGAGTATGGAAGAGCAGGATGAGAAGCCCCAAGGGTCCCTGAAGGTCTGCGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006805:ENSBTAT00000052471:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.500
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development