MmuINT0178672 @ mm10
Intron Retention
Gene
ENSMUSG00000057101 | Zfp180
Description
zinc finger protein 180 [Source:MGI Symbol;Acc:MGI:1923701]
Coordinates
chr7:24081954-24085506:+
Coord C1 exon
chr7:24081954-24082238
Coord A exon
chr7:24082239-24085425
Coord C2 exon
chr7:24085426-24085506
Length
3187 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
AGCTGCTTTTATTTATGCAGCTT
3' ss Score
6.14
Exon sequences
Seq C1 exon
GTGTGTTTGTATGTGTTTGTGTGTGTGCGTGCGTGCGTGTGAGTGTGTGTGTGTGTATGTGTGTGAAGGCGTCTTCTATGGCTCAGCTTTGTGGCTGGGCTCAGTCTACACGGAGCGACCTGGCGGATGCTGACTCGAAGTGGAAGCCAGACCCCCGCCACTCGAGTCATGCCGGGTGTGCTTCAGGATCGGGGCAGGAAGCGGTGAGCACAGTTTCGTTCTGACGCTGAGTCGTGAGTGGCTCAGACCCGCCCCGGTCCTCACCACGGGCTCACGGACGTCCAG
Seq A exon
GTTGGTGTTAGATGTGGGACGCTTACAGTGGTCGATGTGCGCATGCGCAGGGTCTAGGCGGGAATCTGGACGCGTTGGTGTCAGTGACTTGGGGTTCCTGTGCCTCAGAATAGGACTCAGGGTCTCGGGAGGCTGTAAAGAGTGCACAGTTGTGCGCATGCGCGGATGGTTGGTTTTGTGTGGTGGGACTGTGGGACCGAGGATGTCCAAAAGGATGGAAAACAGGGCCTAGGCAAAGGGCAGATAATTGAAAGGCCCGAGGGGACACTAAGGTGCCTTGCGTTTTAGACAAAAAAGTTTTAAAAGAGGTATTATCGCCACAGAGAGACATTGTGGCGGGGCCTCTAAGGTGACAGGGTGTGTCACCAACAGCTCCTAATAACTGACTCTGGTGGCCCTAGGTGCATATGCAGAATCAGCTCTGAGGGTAGGGAGAGACCCTGAGGGTAGGTGCAGAGGTGGGTGTGACCTGAGCAGTTTCCTCTGTGTACGTACAAAAGTACCAGGAACTCCCCTCCTCCCCTGCGTATTTAGTGGAGAGCCTTCCAATGCACAGACTCTTTTTCCCAAAGAGAGGAACCATGCCACTGTTTCTGTACTAGATCTAAGCCCACACTGTATTCGTGAGCAAGTGTTGGTGTCGGAATCACCAGCCTACGTTCTGAAGACGTGGTTCTCCTACCTGGGCAGACACTGTTCTTGCAAGCCTGGGGGTGTCCTGTTTGTTGGAGATGTATGTGGCTTCTGTTCCTAGACCAGGCATGACAGCCAAGCAGAGCAGTGGCCGCTGTTTAGCCCAGTGAGCCAGTGGGTTTATTGTTGTTCCCTACGGAAGTATGAGTGAAGGGTTTCTTACAGGAGCAGGATGAGTCAGCTATGGCACTGAAAAGCCCACGGGAGTGATGACTCAGGGAAGCTGCGTCTCTGGAGGTGCCTACAAGACTCCAAAGCAGCTCATCTGGGCAGGGTACCTCCTCCTCAGCCTTCGCTGTTGCATGTATAATCTTAAGGAAGGGTGTGTGTGTGTATCTTTAAAGTTTCAGCTTCTGAGATCTTTTAAGTTTTGTTTGCTTCCTGAGTCTTAGGAGCCTCCCTTCTCCTTCTAGGAGGGAGCATTTCGATTCGGAGGAAATGGGTTCACACTAGAGCAGCCTGGAGGTCCTGGTTCTTGAACCAGGAGACCCAGTATTGTTTTCAGTTAATCAGTCCTTTCGACAGTCAAGTACCAGATGGAGGGTGTTAGGCAAGGGCCTAACAGAGGATTCTAGGCAGAAGGCCCTGTGCATGTCAGTGTATTCAATTAGAGAATCTGGAACTGGCACCTGAAACCTGAACACCTTAGAGTTCTTAGATGTTCAAGTTGGGTAGAAACTCCAGCTTGGAGGTAAGGAACCTATGCTTTAAAAGGCTGCCTTCTGGTTGGCAACTGGCTGGGAGAAGGCAGATGCTGTAAGCATCTTTACAGAGTATGTGTTGCTAGGATCTTTGCTGTGGCCTGTTCTGCCTTGAAGCAAGAGAATGCCTGCATTTATAGGAGAGCGGGGTGGAAGACAGGTCCCTTGGCTCTAGCCTAAGTTTGAGGACACCTTGGGAGCCAAGTGTTGAGGACCTAGGACTGGTTCTGGAGCTCCGTGCTCAGACTTAGGTAATGGTGTATTTTAACTACAGCTCTGCAGACATGCAGAACTGGTGGCCTCAGGACCATTGTGGCAGCTGTGACTTGGAGCCACAAGGGGACACAGAGTCCTATAAAAATCCGCCTAGAGCTGGGGTGTAACTCAGCTGGTTAAGTGCTTGCCTAGCACAAAGCCCCAGGTTCCATTTCTGGCACTTCATAAATCCGGTCTGGTGGCACATGACTAAAAAAAGCAGTACTTGGGAGGTAGAGGCAGGAGGATGATGCGTGTGAGGCTAGCCTAGACTACATGAAACCCTGACTCAAAGGATAAGGAATCAAAACCAAAACAAGGAAGAACCCCAGATGGGCGGAGCACCCAGGTCCTGAATGCAAATCCTTCATGGGAACCTGCTTGGATGAAAGGTGTGTGCCACCGTGCCCTGCTAGAAATGCACTTTTGACACATAGTGCTGGGATCTTGGTGGATTTTGCTGTAATCAGCACCAGTTGATTCCCAAGTGTAGGGGAAGACAGGGTCTCCCTGGCATTCAGGTGCCCAGGAAGGTGTACAGCAGGAATTACGCAGGTTGAGACTCAAGCTGGAGCCTGGTGGGTGGAGGGAAGTAGGTGGGACTGTACATTAGTGCTGGGGTGAGAATCAGGGGGTGGGGTAGTGAGAGAAAGATGGGGGCAGAGGATGTGGCATAGTTGGTAGAGTGCTTGCCAGTGTGCACAGAACACTGGGTTCCAGCCTTAGCACCACATGAGCAGCAAGGGAGTATGGAGGGGTTGGTGCCTCAAGTGGGATTGGTCAGCTGCCACCCTGCTTTCCAAGTTCGTGACATCAGATGACACAAAGACAGCTGAGCTGCAAAGGTACAGGGTCTGGTCCTGGCAGAGGCTGATATGTGCTGTGGCTGCCAGAGGTCCCCAGTTCCACGTGGGCCATTGTGTCTTTAGTTCCAAAGAGCCCTCCAGACTGATAGAGGAGGAAATCAGGTTCAAGCTACAAATTCAGAGCCTGAGGGTTTGGGTAAGAATCTGAGGAAGAGTCTGGTTGGGTGGGGGAAGGAGGGGCCTGGCCTGGCCCTGGCGGTTTGGGTAGGAAGATGGAGGCTCTGCATGTTTGCTGATGAAAGAACAGTGTTCTCAATGAAATAACTATCTGGAAAGGCTGGGGCTGTGTCCTGAATTTCCTTTATTTGATCAGTGGCTATATGGTTCCTAGGCCTGGAAAGAGATTGTCTTGAAGTTGCACACTCAAGCCAGTAAAGTACGTAATACTAGGGGGTTCTTTAAGTGCTGGGTGTTTGTGGGGCTCCCAAGACCCAATGAATGCCCTGATTGGAGCTGCACATTTAGGTACTGGGCAGATGGTCATGTTTTGAGCATGAGGTGGGCTTACAGGGTAGTGGGGATGGGGGAACAAAGTGGAACTGCAAAGATTTGACCTAGAGCAGCAACTCAGGGATTCTTGGTTAATGTCCAGTTGGGGCATTAACTGCCAGGGGGCAGGCTGGGCTGGAGAGCGACAGTGCAGGCTATGCAGAGCTGCTTTTATTTATGCAG
Seq C2 exon
CTTGGCACCACGCCACACCTGGAGGAGACCATGGAGCAACAAGATGATGAGTCCCTGGAGTCCCTGCAGGCCTGTGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057101:ENSMUST00000203854:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.838
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types