RnoINT0167813 @ rn6
Intron Retention
Gene
ENSRNOG00000029336 | Zfp180
Description
zinc finger protein 180 [Source:RGD Symbol;Acc:631380]
Coordinates
chr1:80920747-80923859:+
Coord C1 exon
chr1:80920747-80921087
Coord A exon
chr1:80921088-80923778
Coord C2 exon
chr1:80923779-80923859
Length
2691 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
AGCTTCTTTTGTTTGTGCAGCTT
3' ss Score
7.15
Exon sequences
Seq C1 exon
TTCCGGGTTTAGCCGGCAGCGCAGCCATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGAGTGTGTGTGTGTATGTGTGTGTGCGTGCGTGTGTGTGTGTGTGTGTATGTGTGTGAAGGCGCCTTCAGTGGCCCGGCTTTGTGGCTGGGCTCAGTCTGCACGGAGCGACCTAGCGGATGCTGACTCGAAGTGGAGGCCAGACCCCGGCCACTCGAATCATGTCGGATGTGCTTCAGGATCGGGGCAGGAAGCGGTGAGCCCCATTTCGTTCTGACGTTGAGTCGTCAGCGGCTCAGACCCGCCCCAGCCCACACCAAGGGCTCTCGGACCTGCAG
Seq A exon
GTTGGTGATAGCGGAGGGACGTTCACAGTGCTCGATATGCGCATGCGCAGGGTCTAGGCGGGAATCTGGACGCGTTAGTGTCAGTGGCTGGGGTTCCTGTCTCAGTCCAGGACTCTGTCGCGGAGGGCTGTGAAGAGGTCACCGTTGTACGCATGTGCGGATGATTGGCTGTGTGGTGGGACTTGTTAGGGACCGAGGATGTCCAGAAGAATGGAAGACAGGGCTCAGGCATAGTTATTGGGGAGATAATTGAAAGGCCCCAGGGGACACTAAAGTGCCTTGCGTTTTGGACAAAAGAGTTTTAGAAGAAGTGTTATCGCCACGAAGAGACAACGTGGTGAGGCCTTTAAGGTGAGGAGAGTTCAGGTCTACTTGGCACAGTAGGGTTCTCTTACTGGTTTGGAGGAAGGAGGGAGCTTTGTAACCACGTAGTTGATGAGTTGTCCCTGCCTGTAGTCAGGCAGCCTCTTGTTTGCTATTTCAGGAGTAAGAGAATGTCTTGCATTTCCTAAAGGGGATGTGTCACCTTGATTCGGGGAGAATGGGCCCATTTAGTCTACTGAGTCCATTACTGGGTATGTCACTTAAAGCTCCTAATAACTGGGAGTCTGATGGCCCTAGGTGCGTAAGCTAAATCCACTCTGAAGGTAGGGAGGGACCCTGAGGGTAGATGCAGAGGTGGGTGTGACCTGAGCAGTTTCCGTGTGTCTGTACTGAAGTACCTAGAAATCCCCTCCTCCCATGCCTACTCAGTGGAGAGCCTTCCAGTGCCCAGATTTCTTTTTCCCAAAGAGAGGAACCATGTCACTGTTTCTGTACTAAATCTAAGCCCACACTGTACTCTTGAGCAAGCATTTGTGTTGGAACCAACATTCTGAAGAGGTGGTTCCAGTCCTCGGGACAGACACTGTTCTGGCAAACCCAAGGATGTCCTGTTTGTTGGAGATGTATGTGGCTTCTGTTCCCAGATCAGACATGACAGCCAAGCAGAGCAGTGGCCCAGTTTAGCCCAGTGAGTGGCTTATTGTTGTTTCCTACAGAAGTAGGCGAGAAGGGTTTCTTACAGGAGCATGTATGACTCAGCTACATCACTGAAAAGCCCACAGGAGTGATGACTCAGGGAAGCTGCCCCTGGAGGTGCCTGCAAGCCTCAAAGGCAGCCTATGTGGGCAGGGTACCTCCTCCCCAGCCTTTGCTATTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTTAAAGTTTCAGCTTCTGAGATTTTTAAGTTTTACTTCCTGAGTCTTAGGAGCCTCCCTTCTCCCTCTAGAAGGGACCATTTCAACTTGGAAGAAATGGGTACACACGAGAGCAGTCTGGAGTTCCTGATTCTTGTCCCAGGAGAGGCAGTATAGCTTCAGTTAATCAGTCCTTTAGACAGTCAAGTACCAGCTTGAGGGTGCAAGGGCCTAGCAGAGGATTCTAGGCAGAAGGCCCCCGTGCGTGCCAGTGTTATTAGAGTAGAGGATCTGGAACTGGGAAACCTGAACATGTTCAAGTTGGGTAGAGACTCCAGCTTGGAGGTAAGGAATCTACCCCTCAGAGGACTCCCCCACCTTAGCTGCCTTCTGATGGACAAGTAGCTGGGAGGAGGCAGATGCTATAAGCATCTTTACAGAGTAGGTATTGCTGGCCTCTTCTGTCTTGAAGCAAGAGAATGCGTAGGTTTATAGGAAGGGTGGAACACAGGGAAGGGTTCCGGTCCCTTGGGAGTGGCTCTAACCCAGGCTTGAGGACACCTAGGGAGCCGAGTGTTGAGGACCTAGGACTGGTTCAGGAGCTACATGCTCAGACTCAGGTGATGTTGTATTTTAATTGCAGCTCTGCAGACATGCAGAACTGGTGACCACAGGACCACTGTGGCAGCTGTGGCTTAGAAACACAGGGGCATACAGATTCCTATAAGAATCTGCCTGGAGCTGGGGTGTAACTCAGCTGGTTAAGTGCTTGCCTAGCATGAACGAAGCCCCAGGTTCCATCTCTGGCACTTCATATATCTGGTGTGGTGGCACAAGCCTATAAGAGCAGCCAGAGGTCCTCAGTCCTGCATAGACCATTGCGGCTCTAGGTCCAAAAGCCCTCCAGACTGATGGAGGAGTCAGGTTCGAGTTACAAATTCAGGGCCTGAGGGTTTGGGTAAGAATCTGGGACAGATTCTGGCTGGATGGTGGAAGGAGGGTCTGTCCTGTCTCTGACTGCTTGGATAGGAAGGTGGAGACTCTGGATGTTTGCTGATAAAAGGGCAGTGTTCTTGGTAAAGTAACTGTTTGGTCAGTGGCTATAGTTTCCTAGCCCTGGGTAGAGGGGTTGTCTTGAAGTTGCACACGCAAGGCAGTAAAGCACGTAATACTAAGGGGTTTTTTGAGTGCTGGGTATTTGTGGGGTTCCCAGCACCCAGTGAGTCTTGATTGGAGCTACACGGTTTGGTACTGGGCAGATGGTCATGTTTTGAGCATGAGGTGGGCTTACAGGGTGGTGGGAATGGAGGAACAAATTGGAGCTGCAAAGATGTGGCCTGGAGGAGGACCTCAGGGATTCTTGGTTAGTGTCCAGTTGGGGCATTAACTGCCAAGGGCAGGCTGGGCTGGAGAGCGGGCGGCAGTGCAGGCTGTACAGAGCTTCTTTTGTTTGTGCAG
Seq C2 exon
CTTGGCACCACGCCACACCCGGAGGGGACCATGGAGCAGCAAGATGATGAGTCCCCGGAGACCCTGCAGGCCTGTGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029336:ENSRNOT00000026077:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.941
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]