HsaINT1047321 @ hg38
Intron Retention
Gene
ENSG00000005801 | ZNF195
Description
zinc finger protein 195 [Source:HGNC Symbol;Acc:HGNC:12986]
Coordinates
chr11:3360720-3361889:-
Coord C1 exon
chr11:3361743-3361889
Coord A exon
chr11:3360789-3361742
Coord C2 exon
chr11:3360720-3360788
Length
954 bp
Sequences
Splice sites
5' ss Seq
CTGGTAATC
5' ss Score
3.45
3' ss Seq
TCTTCTTATCTGGCTCCTAGCAC
3' ss Score
6.64
Exon sequences
Seq C1 exon
AGATGGGATTTCACCATGCTACTCAGGCTTGTCTTGAACTCCTGGGCTCAAGCGATCTGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAACCACCGTGCCCAGCCAGGCCTCAATGTTTCTGTGGACAAATTCACTG
Seq A exon
GTAATCTCCTAAGAGCATGTACCTTGCTTTTCACTTGCTGCTTTCAGGATTCTTTTCTCCTTTGACTTTGGAAACTGTGGTTATAATGTGTCTTATGTCCCTTTTTGTTTATACTAGTTGATGTGTTGAGCTTCTTGATTTTTTTGTATTTTTTTCTTACTTTTGAGAATTTCTCAGTAATTATTTCCTTTCATACCTCAGTTTCTCAGTCTGTTTTTCATACTTCATGTCTTTTTATTGGTATCCTTATTTTCCTAATTTTACTTAGTTTGCTGTTTTGCCATTTTTACTCATTGAGCATTATTCAAATGGTAATTTTATTTTCTTCAGTTAATTTATGCATCTCCATCATTTTAGGGTTGATTTCTGAACTTTTTTTATTTCTTTGATTATGCCATGTGACCCTAATACTTTGTACATGTCATCTTTGACTGAGATTCAGGCATTAACAACAAGCCTCCTGCCACAACCTTTATAATGTGCCTTTCTCCTGGGGTCATCTAAAACAAATAGGCCCAGATTCTAGAGGCCTCTTAAGCCTGTTCTGGGATGTGTCTTGTGTGGAATTGTGTGTGTATTTTTCATTTAAAGAGGGTTTCTCAGCTTTCTTTGTAGTGCCCTGGAATCACACAATACACTTGTCGCCTGGTGCTGCTGCTGCAGCCTTCCTACCGCTGTCATGGGTATTTCCTTTCGGTCTCAGCAGACCCAGCCTGTCACTCAGAGTACCACCATTTCTCTCAGCACTCCGTGTCACAGGGGGCAGAAACCAATCTTTGCCAAAGCTTCAAAAGGCCAAAAGTAAAAACACTTGTGCCAGTATTTGCTTTCTCTTTTGAAGGAGAAGCCAAGAGCTGAGGGTGTACTCTTAAAGGCATGATGCTATACTGCGGAGGAGCGGGGGCTGCAGTGGGTAAACGTAACAGACTGTTTTTCTTCTTATCTGGCTCCTAG
Seq C2 exon
CACTGTGCTCACCTGGGGTGCTGCAAACTGTGAAATGGTTTTTAGAGTTCAGATGCATCTTCTCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005801:ENST00000399602:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGGGATTTCACCATGCTACT
R:
AGTGAGAAGATGCATCTGAACTCT
Band lengths:
214-1168
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains