HsaEX1044858 @ hg38
Exon Skipping
Gene
ENSG00000005801 | ZNF195
Description
zinc finger protein 195 [Source:HGNC Symbol;Acc:HGNC:12986]
Coordinates
chr11:3339261-3371070:-
Coord C1 exon
chr11:3370975-3371070
Coord A exon
chr11:3360160-3360565
Coord C2 exon
chr11:3339261-3339822
Length
406 bp
Sequences
Splice sites
3' ss Seq
ACTTTTTTTTTTTTTTTCAGCTA
3' ss Score
11.13
5' ss Seq
CCAGTGCTC
5' ss Score
-9.5
Exon sequences
Seq C1 exon
GTCTCACTGTCTGTAAGCCAGGCCTGATCACCTGCCTGGAGCAACGAAAAGAGCCCTGGAATGTGAAGAGACAGGAGGCAGCAGACGGACATCCAG
Seq A exon
CTATGTCTTCTCATTTTACCCAAGACCTTCTGCCAGAGCAGGGCATACAAGATGCATTCCCAAAAAGAATACTGAGAGGATATGGAAATTGTGGCCTTGATAATTTATATTTAAGGAAAGACTGGGAAAGTTTAGATGAGTGTAAGTTGCAAAAAGATTATAATGGACTTAACCAATGTTCATCAACTACCCATAGCAAAATCTTTCAATATAATAAATATGTTAAAATCTTTGATAACTTTTCAAATTTACATAGACGTAATATAAGTAATACTGGAGAGAAACCTTTCAAATGTCAAGAATGTGGCAAATCCTTTCAAATGCTCTCATTCCTAACTGAACATCAGAAAATTCACACTGGAAAAAAATTCCAAAAATGTGGAGAATGTGGCAAAACCTTTATCCA
Seq C2 exon
GTCAACATGGCTGAACAGGAGCCTCGTTCTCTGTCAGAATCGCCCTACTTGCCCTACCTCATGGCTGGCCCTTCCGGACCATTGATGGGCTGCCAGCCACCCCCTCCACCTCCGTGTCCTCTGGGACCTCAACCACTCTCTGCAACTGAAGGTTTTCTGGGACCTCTGATACATCCTCCACTCGAACATCCTCTGGGACCTGAAACACCTTCTCCAGCTGAAGTTTTACTGAGAACTCAGATACCTCCTCCACTCAAGTTTCCTAATGGACCTCAGCAATGTCCTCCACTCGAGTGTCCCCTGGAACTTCAATCATCTCCTCCACTCTAGTGTCCTCTGGGACTTCAACTACCTACTGCACTTGAGTGTCCTCTGGGACCTCAACCACCTCCACTCAAGTGTCCTCTGGGACCTCAACCACCTCCTCCAGTTGAGTGTCCTCTGGGACCTCAACCACCTCCTCCAGTTGAGTGTCCTCTGGAACCTCAACAACCTTCTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005801_MULTIEX1-10/13=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.149 A=0.014 C2=0.125
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0),PF102634=SprT-like=FE(31.4=100),PF134651=zf-H2C2_2=PU(8.3=6.1)
A:
PF134651=zf-H2C2_2=WD(100=17.6),PF134651=zf-H2C2_2=WD(100=18.4)
C2:
PF134651=zf-H2C2_2=PD(0.1=0.0)
Main Inclusion Isoform:
ENST00000528796fB30626
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACGAAAAGAGCCCTGGAA
R:
AGTGGAGGACATTGCTGAGGT
Band lengths:
346-752
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains