HsaEX0073151 @ hg38
Exon Skipping
Gene
ENSG00000005801 | ZNF195
Description
zinc finger protein 195 [Source:HGNC Symbol;Acc:HGNC:12986]
Coordinates
chr11:3360720-3371070:-
Coord C1 exon
chr11:3370975-3371070
Coord A exon
chr11:3361743-3361889
Coord C2 exon
chr11:3360720-3360788
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTGTATTTTCTGTAGAGA
3' ss Score
8.6
5' ss Seq
CTGGTAATC
5' ss Score
3.45
Exon sequences
Seq C1 exon
GTCTCACTGTCTGTAAGCCAGGCCTGATCACCTGCCTGGAGCAACGAAAAGAGCCCTGGAATGTGAAGAGACAGGAGGCAGCAGACGGACATCCAG
Seq A exon
AGATGGGATTTCACCATGCTACTCAGGCTTGTCTTGAACTCCTGGGCTCAAGCGATCTGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAACCACCGTGCCCAGCCAGGCCTCAATGTTTCTGTGGACAAATTCACTG
Seq C2 exon
CACTGTGCTCACCTGGGGTGCTGCAAACTGTGAAATGGTTTTTAGAGTTCAGATGCATCTTCTCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005801-'8-26,'8-24,31-26
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.149 A=0.013 C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0),PF102634=SprT-like=FE(31.4=100),PF134651=zf-H2C2_2=PU(8.3=6.1)
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACTGTCTGTAAGCCAGGC
R:
TAGTGAGAAGATGCATCTGAACTCT
Band lengths:
162-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development