HsaINT1047322 @ hg38
Intron Retention
Gene
ENSG00000005801 | ZNF195
Description
zinc finger protein 195 [Source:HGNC Symbol;Acc:HGNC:12986]
Coordinates
chr11:3358766-3360788:-
Coord C1 exon
chr11:3360720-3360788
Coord A exon
chr11:3360566-3360719
Coord C2 exon
chr11:3358766-3360565
Length
154 bp
Sequences
Splice sites
5' ss Seq
TAGGTATTG
5' ss Score
5.64
3' ss Seq
ACTTTTTTTTTTTTTTTCAGCTA
3' ss Score
11.13
Exon sequences
Seq C1 exon
CACTGTGCTCACCTGGGGTGCTGCAAACTGTGAAATGGTTTTTAGAGTTCAGATGCATCTTCTCACTAG
Seq A exon
GTATTGTTACATTTATATGTTTATACAGAAATTAGGGCCTGTGGTATTTTTTATGCCATTTTGCTAATGTACCCAGTATTATTTTATAGATTAGATTCATAAAGTGTATTCATCTGTGTCTAGTAAGTCGGATAACTTTTTTTTTTTTTTTCAG
Seq C2 exon
CTATGTCTTCTCATTTTACCCAAGACCTTCTGCCAGAGCAGGGCATACAAGATGCATTCCCAAAAAGAATACTGAGAGGATATGGAAATTGTGGCCTTGATAATTTATATTTAAGGAAAGACTGGGAAAGTTTAGATGAGTGTAAGTTGCAAAAAGATTATAATGGACTTAACCAATGTTCATCAACTACCCATAGCAAAATCTTTCAATATAATAAATATGTTAAAATCTTTGATAACTTTTCAAATTTACATAGACGTAATATAAGTAATACTGGAGAGAAACCTTTCAAATGTCAAGAATGTGGCAAATCCTTTCAAATGCTCTCATTCCTAACTGAACATCAGAAAATTCACACTGGAAAAAAATTCCAAAAATGTGGAGAATGTGGCAAAACCTTTATCCAGTGCTCACACTTTACTGAACCTGAGAACATTGACACTGGAGAGAAACCTTACAAGTGTCAAGAATGTAACAACGTCATTAAAACTTGCTCAGTCCTTACTAAAAATAGAATTTATGCCGGAGGGGAACATTACAGATGTGAAGAATTTGGCAAAGTATTTAACCAGTGCTCCCACCTTACTGAACATGAGCATGGTACTGAGGAAAAACCCTGCAAATATGAAGAGTGCAGCAGTGTCTTTATCTCTTGCTCAAGCCTTTCTAATCAACAGATGATTCTTGCTGGAGAGAAGCTCTCCAAATGTGAAACATGGTACAAAGGTTTTAACCACAGCCCAAATCCTTCCAAACACCAGAGAAATGAGATTGGAGGGAAACCTTTCAAATGTGAGGAATGTGACAGCATCTTCAAGTGGTTCTCAGACCTTACTAAACATAAGAGAATTCACACTGGTGAGAAACCATACAAATGTGACGAATGTGGGAAAGCCTATACACAGTCCTCACACCTCAGTGAACACAGGAGGATTCACACCGGAGAGAAACCCTACCAATGTGAAGAATGTGGGAAGGTCTTCAGAACTTGCTCAAGCCTTTCTAACCATAAGAGAACTCATTCTGAAGAAAAACCCTACACGTGTGAAGAATGTGGCAACATCTTTAAGCAGTTATCAGACCTCACTAAGCATAAGAAAACCCATACTGGAGAGAAGCCCTACAAATGTGACGAATGTGGAAAAAACTTTACCCAGTCCTCCAACCTTATTGTACATAAGAGAATTCATACTGGAGAGAAACCCTACAAGTGTGAAGAATGTGGCAGAGTCTTCATGTGGTTCTCAGACATTACCAAACATAAGAAAACCCATACTGGAGAGAAACCCTACAAATGTGACGAATGTGGAAAAAACTTTACCCAGTCCTCAAACCTTATTGTACATAAGAGAATTCATACTGGAGAGAAACCCTACAAGTGTGAAAAGTGTGGCAAAGCCTTCACCCAGTTCTCACACCTGACTGTACATGAAAGCATTCATACTTGAGAAAAAAATAAACAAATATAAAAATAGGCAAAGCCGTTAGTATCTGCTCGCATCCCACTTTACATCAGAGTTCAGACTTAATAAAGTTATCATAAATGTAATTACTATTGAAAGACCTTTCATGAAATATAAGTCTCCAGAGCACACAAGAGTATTTCTTCTGAAAAAAATGTTACAATTATACTAGATGGAAGACTTGCATCAGTTGCTTAAACTTTCAGAAAATTTGTAGAGAAACCCAACAAATCTCATAAATGTGGAATAACATTTGTTCAAAAATGATAGCTTAGAAAACACTAGAGTTCATACTAAAAGATATTTTGCAAATACACTAAATGGGAAAAATAAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005801:ENST00000399602:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.015
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGTGCTGCAAACTGTGAAA
R:
TGGGTAGTTGATGAACATTGGT
Band lengths:
248-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains