HsaINT1047362 @ hg38
Intron Retention
Gene
ENSG00000249459 | ZNF286B
Description
zinc finger protein 286B [Source:HGNC Symbol;Acc:HGNC:33241]
Coordinates
chr17:18681615-18682259:-
Coord C1 exon
chr17:18682204-18682259
Coord A exon
chr17:18681847-18682203
Coord C2 exon
chr17:18681615-18681846
Length
357 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TGCTGTCCCCGGGCTTCCAGGCT
3' ss Score
6.53
Exon sequences
Seq C1 exon
CGCGACTCCGAGCTGGCCAAAGAAGTTCGTCCCCTTTGTGAGGCCCGGGATGGGAG
Seq A exon
GTGAGTTGCTTGTGGTGATGTCTCTCGTCTCGGCTCGGCCTCGGCGGTAGTTCCCCGGGTCGTTCTGTGCCGAGTCGGGGCTAGAGTGCGCGTTTGTTAAAGGGGCCTCGAGGGCAGACCATGAGCCCTGTCCCTTCTCACTCTGGCCTGATCCTCTCCTCGGGGGACGCGGTTGTGCCACGGGCGGGGTGGTCGCGGGGTCCTGGGCCAGTGCCCCGAGCGCGGCAGAATTTGTCCAAACTCCTGATGCCCCAGCGTCACCTCTTCCAGGCGCCCGGTTCCCCCAGGGACAGCTTCAAGCGGTAGGGACAGACATCTGAGGACCCAGCCTCAGGGATGCTGTCCCCGGGCTTCCAG
Seq C2 exon
GCTCCAGCGCCGTAGGACTGAGGCAGACTCCACGGTGAGAAAGAGACCCGATCTAACCCAGGCCTTTCATCAGAGCCCAGGAGGGAAGGCAGGAAGTGGGACCACGAGGCCCGGGGGGCTTCTAACTCGTCTGGCCAGGGAGATCTGAATTGGGGTGAAGAGCAGAATCTCCAGAACAAGGAGGAGGTGGTGATCATGGAGACAGATTTGGCTGAAATGCCTGAGAAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000249459:ENST00000545289:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACTCCGAGCTGGCCAAA
R:
CTCCTTTCTCAGGCATTTCAGC
Band lengths:
286-643
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains