HsaINT1047477 @ hg38
Intron Retention
Gene
ENSG00000197044 | ZNF441
Description
zinc finger protein 441 [Source:HGNC Symbol;Acc:HGNC:20875]
Coordinates
chr19:11778116-11778393:+
Coord C1 exon
chr19:11778116-11778179
Coord A exon
chr19:11778180-11778329
Coord C2 exon
chr19:11778330-11778393
Length
150 bp
Sequences
Splice sites
5' ss Seq
TATGTAAGT
5' ss Score
6.69
3' ss Seq
TTTCTGGTTCTAACTTTTAGGAA
3' ss Score
10.14
Exon sequences
Seq C1 exon
ACTGAATAAGAGGAGGGGTTGGTCTTGCTGTCTCAAGAGTAGCAGAGACTGAAGAAATTCATAT
Seq A exon
GTAAGTAGACCTGTGCAGTTCAAACCTGTGTTGAAGACTCAGCTGTAGTTTGGTGTGTGAATCATGCATGATTGTAGTGTACATAAAATCTTACAGTCTTTCTATAATTTTATAATAATTTATAGTCATTTTTCTGGTTCTAACTTTTAG
Seq C2 exon
GAATGATATGGCAAAATCATGATATAGAAGAAGATCAGTACAAAGATCTCAGAAGAAATCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197044:ENST00000409902:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAATAAGAGGAGGGGTTGGT
R:
TTTCTTCTGAGATCTTTGTACTGATC
Band lengths:
122-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains