HsaINT1047580 @ hg38
Intron Retention
Gene
ENSG00000198182 | ZNF607
Description
zinc finger protein 607 [Source:HGNC Symbol;Acc:HGNC:28192]
Coordinates
chr19:37707914-37709822:-
Coord C1 exon
chr19:37709696-37709822
Coord A exon
chr19:37708013-37709695
Coord C2 exon
chr19:37707914-37708012
Length
1683 bp
Sequences
Splice sites
5' ss Seq
TGGGTATGT
5' ss Score
7.43
3' ss Seq
GCACTTCTTTTCTTTGTAAGCAG
3' ss Score
2.02
Exon sequences
Seq C1 exon
GGATCAATAACATTCGGGGATGTGGCCATAGACTTCTCTCATCAGGAGTGGGAATATCTCAGCCTGGTTCAGAAGACCTTGTACCAGGAGGTGATGATGGAGAACTATGACAACTTAGTCTCATTGG
Seq A exon
GTATGTTTATCAACCTGGAATGATTTAGAATAATTTAGAATCATCTGTTTCGTAGGATACATTCTTTTTCTGTTGTGGTTTTCAGGGCTGCCTTTTAAGAAACTAAATTTATTTTCTCTATTTCTATTGAGGTGGTTTCAGCTTTGAGTCAGTAATGGCAGGTCCTTTCAACACTTTCATCTTCTCTATCTTTCAGTGACATTCACACCTCCCTCTGATACCTCTTTTATTTGTCTCTTTAACCCAGTAAGTGGGTTGAACCAGTGGTTTAGCTTGGAATTTTCTGGTGTTCATTGTAGAACCATTGTCAGGGCGTTCAGGTTTCTTATTTATTTTGTGCACAGAATTGCTATAGTGCTCCATTTTATTATCTGATCCATTTGCAGTGATATTACTTTGAAAGAGGGTGCTGAATTGCCGTTATTATTGAAAGAGACTGTTCATATAGGCATAGAGTGGTGGACTGGATAAATGAAACTTACTTAAAATTGAGAAGAAAGTAGTCCATTTCCTGAGACAGAATTCATTTGATTTATGGTTGAAGCTTATAATCCATGAAAATCACATGTAAAATGGGATGAATATACTATAGATATCTCTTCTTGTATAGTCTTAGTAAAATAATTGCAGCAGTGTAATGTGAACAGCTAGCATTGTGATTTCCACACCAACATTTTTCTAATTACTTTACTCATATATCAAGTAATTTAATACTCCCAACAGCTTTATTGTTTTCCCAATTTTATAAGTGAGAATACTGACCAGCAGTGTAAGTAACTTGCCCAAGGTCACACACAGCTGGAAGGTGACAGAGTCAGGAATTGATCCCAGGCTTTTTTTTTTTTTTTTTTGAGACAGAGTCTTCTGTCACCCAGGCTGGAGTGCTGTGGTGCGATCTTAGCTCACTGCAACCTCCGCCTCCCGGGTTAAAGTGATTCTCCTGCCTCACCCTCCTTAGTAGCTGGGATTAGAGGCACTACCACCACACCTACAGATAATTTTTATATTTTTAGTAGAGACAGGGTTTCACCATATTGGCCAGGCTGGTCTCCAACTCCTGACCTCAGGGCCTCCCAAAGTGCTGGGGTTACAAGGCATGAGCCACCGCACCCAGCCAATCCCAGGCTTTAGAGTATGTGTTTTCAACCACTTTATGCTTGCTTTCTACAGTTAGAGGACATATAAGTTTAAATTTCTTTTGAGACTGGGCACGGTGGCTCATGCCTGTAATCCCAGTGCTTTGGGAGGCCCAGATGAGCGGATCACAAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGCGAAACCCCATTTCTACTAAAAATACAAAAATTAGCCAGGCATGGTGGTGCACGCCTATAATCCCAGCTACTCAGGAGACTGAGGCAGGAGAATCACTTTAACCTGGGAGGCGGAGGTTGTGGTGTGCCGAGATGGCGCCGTTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCGCAAAAAAAAAAAAAAAATTTTTTTTGAAAACCAGCAAACAAAAACATTGACTCTCCCTGGGTGATCTTTTTCTTTATTTCCCTCACTCTTCTCTAAAATCTTACTCAGTATCACTTTGACCTTTCATTTATTGCAATTGTAATTTTAAATTTTACCTTCAAAGTTGATTTCCGTATTTTGTGGCACTTCTTTTCTTTGTAAG
Seq C2 exon
CAGGACATTCCGTATCTAAGCCAGATTTAATCACCTTATTGGAGCAAGGAAAAGAGCCATGGATGATTGTGAGGGAAGAAACAAGAGGAGAGTGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198182:ENST00000355202:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATAACATTCGGGGATGTGGC
R:
TGTACACTCTCCTCTTGTTTCTTCC
Band lengths:
222-1905
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains