HsaINT1048203 @ hg38
Intron Retention
Gene
ENSG00000185863 | TMEM210
Description
transmembrane protein 210 [Source:HGNC Symbol;Acc:HGNC:34059]
Coordinates
chr9:137171414-137171776:-
Coord C1 exon
chr9:137171641-137171776
Coord A exon
chr9:137171444-137171640
Coord C2 exon
chr9:137171414-137171443
Length
197 bp
Sequences
Splice sites
5' ss Seq
GGGGTGCGT
5' ss Score
5.27
3' ss Seq
GTTGGCCTTCGTCCCCTCAGTGA
3' ss Score
8.58
Exon sequences
Seq C1 exon
CTGGAACCTACTGTGAATGCAGCCTTGGCCTCAGCCGCGAGGCCCTCATCGCCCTCCTTGTGGTGCTGGCGGGCATCAGTGCCAGCTGCTTCTGTGCCCTCGTCATCGTGGCAATTGGTGTCTTGCGGGCCAAGGG
Seq A exon
GTGCGTGAACCCTGGGGCCGGGAGAGGATGGGAGTGAGGCCAGGCTGGCTGCCCTGGGCCCTTGGTCTTGCAAGAAGGGCTTTACCCCCTGGGTGGGCTGTCACCTGGGGTAGGAATGGCGTTTCCTAGGCGTGTGCTGGGGGAGCTCCGGGGGCCCAGCACTGTTCCAGGACTCATGTTGGCCTTCGTCCCCTCAG
Seq C2 exon
TGAAACATGCCCGAGACAAGTGGACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185863:ENST00000413619:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF151951=TMEM210=PU(37.1=93.5)
A:
NA
C2:
PF151951=TMEM210=FE(8.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAACCTACTGTGAATGCAGC
R:
CTGTTGTCCACTTGTCTCGGG
Band lengths:
165-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains