RnoINT0152536 @ rn6
Intron Retention
Gene
ENSRNOG00000040275 | Tmem210
Description
transmembrane protein 210 [Source:RGD Symbol;Acc:2318321]
Coordinates
chr3:2504923-2505319:+
Coord C1 exon
chr3:2504923-2505058
Coord A exon
chr3:2505059-2505289
Coord C2 exon
chr3:2505290-2505319
Length
231 bp
Sequences
Splice sites
5' ss Seq
GGAGTGCGT
5' ss Score
1.92
3' ss Seq
CCTGCCTTTGTCCCCCTCAGTGA
3' ss Score
9.71
Exon sequences
Seq C1 exon
CTGGAACCTACTGTGAATGCAGCCTCGGTCTCAGCCGTGAGGCCCTTATTGCCCTCATTGTGGTGCTGGCTGGTATCAGTGCCAGCTGCTTCTGTGCCCTCGTTGTTGTGGCGCTTGGTGTCTTTCGGGCCAAGGA
Seq A exon
GTGCGTGAGCTTTGGATTGGGCACAGTGGGAGTGAGGCTTTAATTCTGGCCCCAGGCTGTTAGTCATGCTTTGAGGGGCCTCTTCCTAGGGTGGTATGTCATGAGAGGCTGGGGATAGTGTTTTCCAAGGTGCGTGTTGGGTATGAGGGTTGTAGGAAGATGTTGCAGGGGACTTCCAGGCGTAAGAATGAGCATTTCTCCAAAGATCACACCTGCCTTTGTCCCCCTCAG
Seq C2 exon
TGACACGTGCCCTGGACACTCGGAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000040275:ENSRNOT00000061987:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.545
Domain overlap (PFAM):
C1:
PF151951=TMEM210=PU(37.1=93.5)
A:
NA
C2:
PF151951=TMEM210=FE(8.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAACCTACTGTGAATGCAGC
R:
CTGTTTTCCGAGTGTCCAGGG
Band lengths:
165-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]