MmuALTA0000839-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000035435 | Abca17
Description
ATP-binding cassette, sub-family A (ABC1), member 17 [Source:MGI Symbol;Acc:MGI:3625331]
Coordinates
chr17:24437236-24444545:-
Coord C1 exon
chr17:24444391-24444545
Coord A exon
NA
Coord C2 exon
chr17:24437236-24437370
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TGAAAGGTCTGTCTCCTCAGGAC
3' ss Score
6.83
Exon sequences
Seq C1 exon
GTCTCATTACTCCATCAAAAGGACATGCATATATCCATGGATGTGAAATTTCAAAAGACATGGTTCAAATTAGGAAGAGCCTGGGCTGGTGCCCACAGCATGACATTTTATTTGATAACTTTACAGTAACTGACCACCTTTATTTCTACGGTCAG
Seq A exon
NA
Seq C2 exon
GACTGTCACGAGCAAACCCAGGAGATGCTGCATCTGCTTGGTCTGAAGGACAAGTGGAACTCAAGGTCCAAGTTCCTGAGTGGGGGCATGAAGCGCAAGCTCTCCATTGGCATCGCCCTCATAGCGGGCTCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035435-14-15,14-14-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(35.2=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(35.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCACAGCATGACATTTTAT
R:
ACCAAGCAGATGCAGCATCTC
Band lengths:
107-128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: