MmuALTA0000839-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000035435 | Abca17
Description
ATP-binding cassette, sub-family A (ABC1), member 17 [Source:MGI Symbol;Acc:MGI:3625331]
Coordinates
chr17:24437236-24444545:-
Coord C1 exon
chr17:24444391-24444545
Coord A exon
chr17:24437371-24437391
Coord C2 exon
chr17:24437236-24437370
Length
21 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CCCCGTTTCTTGCCTTTCAGCTG
3' ss Score
10.66
Exon sequences
Seq C1 exon
GTCTCATTACTCCATCAAAAGGACATGCATATATCCATGGATGTGAAATTTCAAAAGACATGGTTCAAATTAGGAAGAGCCTGGGCTGGTGCCCACAGCATGACATTTTATTTGATAACTTTACAGTAACTGACCACCTTTATTTCTACGGTCAG
Seq A exon
CTGAAAGGTCTGTCTCCTCAG
Seq C2 exon
GACTGTCACGAGCAAACCCAGGAGATGCTGCATCTGCTTGGTCTGAAGGACAAGTGGAACTCAAGGTCCAAGTTCCTGAGTGGGGGCATGAAGCGCAAGCTCTCCATTGGCATCGCCCTCATAGCGGGCTCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035435-14-15,14-14-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(35.2=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(35.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCACAGCATGACATTTTAT
R:
ACCAAGCAGATGCAGCATCTC
Band lengths:
107-128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: