GgaALTA1002926-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000001967 | ABCA3
Description
ATP-binding cassette, sub-family A (ABC1), member 3 [Source:HGNC Symbol;Acc:HGNC:33]
Coordinates
chr14:13578351-13578982:-
Coord C1 exon
chr14:13578828-13578982
Coord A exon
chr14:13578501-13578506
Coord C2 exon
chr14:13578351-13578500
Length
6 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
3' ss Seq
TCCTTCCCCTTGTGTGGCAGCTG
3' ss Score
8.8
Exon sequences
Seq C1 exon
GTCTGTACTCCCCAACGAGTGGGCAGGCGTACATCAATGGCTACGAGATCTCTCAGGACATGGTTCTGATCCGCCGGAGCCTGGGGCTGTGTCCGCAGCACGACGTGCTCTTTGACAACATGACGGTGGAGGAGCACCTCCACTTCTATGCAGGG
Seq A exon
CTGAAG
Seq C2 exon
GGATACCCAGCCTCCAAGTGTCCTGAGGAGATCAACCATATCCTGCGGATCCTCAACCTGGAGGACAAGCGGCACTCTCTGACCAAGGCGCTCTCTGGTGGCATGAAGCGCAAGCTGTCCATTGGCATCGCCCTCATCGGGGACTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001967-16-20,16-19-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(35.2=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(35.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCTCCACTTCTATGCAGG
R:
GTCAGAGAGTGCCGCTTGTC
Band lengths:
105-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]