Special

MmuALTA0000846-2/3 @ mm10

Alternative 3'ss

Gene
Description
ATP-binding cassette, sub-family A (ABC1), member 3 [Source:MGI Symbol;Acc:MGI:1351617]
Coordinates
chr17:24385398-24385972:+
Coord C1 exon
chr17:24385398-24385552
Coord A exon
chr17:24385817-24385837
Coord C2 exon
chr17:24385838-24385972
Length
21 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CTCTCATTCCTGCCTTCCAGCTG
3' ss Score
10.4
Exon sequences
Seq C1 exon
GCCTCTTCCCCCCTACCAGTGGACATGCTTATATTCATGGGTACGAAATTTCCCAAGACATGGCTCAGATCCGCAAGAGTTTGGGCCTGTGTCCCCAGCATGATGTACTGTTTGACAACCTGACAGTTGCCGAACATCTTTACTTCTATGCACAG
Seq A exon
CTGAAAGGCCTCTCTCTCCAG
Seq C2 exon
AAGTGTCCTGAGGAAGTCAAGCAGATGCTACACATCCTCAGCCTGGAGGACAAGCGTGACTTACGGTCCAAGTTCCTGAGTGGGGGCATGAAGCGCAAGCTCTCCATTGGCATCGCCCTCATAGCGGGCTCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024130-28-41,28-40,28-39-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact

Protein isoform when splice site is used (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0000522=ABC_tran=FE(35.2=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(35.2=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGACAGTTGCCGAACATC
R:
CGTAAGTCACGCTTGTCCTCC
Band lengths:
103-124
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types