MmuALTA0001935-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000039831 | Arhgap29
Description
Rho GTPase activating protein 29 [Source:MGI Symbol;Acc:MGI:2443818]
Coordinates
chr3:122007954-122009914:+
Coord C1 exon
chr3:122007954-122008091
Coord A exon
chr3:122009826-122009851
Coord C2 exon
chr3:122009852-122009914
Length
26 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
ATGTAATTTTATTTCTTTAGCTT
3' ss Score
6.81
Exon sequences
Seq C1 exon
GGAATTTATCGTGTTTGTGGAAACAAAATAAAAACTGAAAAACTGTGCCAAGCTTTGGAAAATGGGATGCACTTAGTAGACATTTCAGAATTCAGTTCACATGACATCTGTGATGTCTTGAAATTATACCTGCGACAG
Seq A exon
CTTCCAGAACCATTTATTTTATTCAG
Seq C2 exon
ATTGTACAAGGAATTTATAGACCTTGCAAAAGAGATACAACATGTAAATGAAGAACAAGAGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039831-45-44,45-43,45-42-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.147
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(25.7=100)
A:
NA
C2:
PF0062022=RhoGAP=PD(29.8=93.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTGGAAAATGGGATGCACT
R:
GTTGTATCTCTTTTGCAAGGTCT
Band lengths:
128-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types