RnoALTA0004245-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000012563 | Arhgap29
Description
Rho GTPase activating protein 29 [Source:RGD Symbol;Acc:1306185]
Coordinates
chr2:225604695-225606798:+
Coord C1 exon
chr2:225604695-225604832
Coord A exon
chr2:225606566-225606591
Coord C2 exon
chr2:225606592-225606798
Length
26 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
ATGTAATTTTATCTCTTTAGCTT
3' ss Score
7.56
Exon sequences
Seq C1 exon
GGAATTTATCGTGTTTGTGGAAACAAAATAAAAACTGAAAAACTGTGCCAAGCTTTGGAAAATGGAATGCACTTAGTAGACATTTCAGAATTCAGTTCACATGACATCTGTGATGTCTTGAAATTATACCTGCGACAG
Seq A exon
CTTCCAGAACCATTTATTTTATTCAG
Seq C2 exon
ATTGTACAAGGAATTTATAGACCTTGCAAAAGAGATACAACATGTAAATGAAGAACAAGAGGCAAAAAAAGATAGCCCCGAAGACAAAAAGCACCCACACGTGAGCATAGAAATCAACCGCATCCTTCTGAGGAGCAAGGACCTGCTGCGACAGCTGCCAGCATCAAACTTCAACAGTCTTCATTACCTCATCGTCCATCTGAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012563-35-37,35-36-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.179
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(25.7=100)
A:
NA
C2:
PF0062022=RhoGAP=FE(44.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTTGAAATTATACCTGCGACA
R:
ACGTGTGGGTGCTTTTTGTCT
Band lengths:
127-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]