MmuALTA0004124-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000014609 | Chrne
Description
cholinergic receptor, nicotinic, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:87894]
Coordinates
chr11:70428803-70429088:-
Coord C1 exon
chr11:70428902-70429088
Coord A exon
chr11:70428817-70428819
Coord C2 exon
chr11:70428803-70428816
Length
3 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGC
5' ss Score
8.8
3' ss Seq
AGCGCTTGCTGTTGCCTTAGCAG
3' ss Score
2.49
Exon sequences
Seq C1 exon
ATTTTATTAGAGCTGCTGCCGCGTCTCCTGGGCTCGAGCCCACCCCCAGAGGATCCCCGAACTGCCTCACCAGCGAGGCGTGCCTCGTCTGTGGGCATTCTGCTCAGAGCGGAGGAGCTCATCTTGAAAAAGCCGCGGAGCGAACTCGTGTTTGAGGGTCAGAGGCATCGGCACGGAACTTGGACCG
Seq A exon
CAG
Seq C2 exon
CAGCCCTCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014609-9-13,9-12-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.175 A=NA C2=0.055
Domain overlap (PFAM):
C1:
PF0293211=Neur_chan_memb=FE(27.1=100)
A:
NA
C2:
PF0293211=Neur_chan_memb=FE(15.4=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: