MmuEX0011389 @ mm9
Exon Skipping
Gene
ENSMUSG00000014609 | Chrne
Description
cholinergic receptor, nicotinic, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:87894]
Coordinates
chr11:70428385-70429088:-
Coord C1 exon
chr11:70428902-70429088
Coord A exon
chr11:70428710-70428816
Coord C2 exon
chr11:70428385-70428630
Length
107 bp
Sequences
Splice sites
3' ss Seq
GCTTGCTGTTGCCTTAGCAGCAG
3' ss Score
4.14
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
ATTTTATTAGAGCTGCTGCCGCGTCTCCTGGGCTCGAGCCCACCCCCAGAGGATCCCCGAACTGCCTCACCAGCGAGGCGTGCCTCGTCTGTGGGCATTCTGCTCAGAGCGGAGGAGCTCATCTTGAAAAAGCCGCGGAGCGAACTCGTGTTTGAGGGTCAGAGGCATCGGCACGGAACTTGGACCG
Seq A exon
CAGCCCTCTGCCAGAACCTGGGTGCTGCAGCCCCAGAAATCCGCTGCTGTGTGGATGCTGTGAACTTTGTGGCTGAGAGCACAAGAGACCAGGAAGCCACTGGAGAG
Seq C2 exon
GAACTGTCCGACTGGGTGCGTATGGGGAAGGCCCTGGACAATGTCTGTTTTTGGGCAGCTTTGGTGCTCTTCAGCGTTGGTTCTACTCTCATCTTCCTTGGGGGTTACTTCAACCAAGTTCCTGATCTCCCTTACCCACCGTGCATCCAACCATGAGCCTGCACTGGCACCCACCTCTCCCCCACCCCCCAAGAAAGAGATTTTGAAAACAGGCCGCTGACAATAAATCTGGTTTGTGAACTTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014609_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=50%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
Show structural model
Features
Disorder rate (Iupred):
C1=0.175 A=0.055 C2=0.020
Domain overlap (PFAM):
C1:
PF0293211=Neur_chan_memb=FE(27.1=100)
A:
PF0293211=Neur_chan_memb=FE(15.7=100)
C2:
PF0293211=Neur_chan_memb=PD(13.5=59.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTTATTAGAGCTGCTGCCGCG
R:
CACCAAAGCTGCCCAAAAACA
Band lengths:
251-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types