RnoEX0021239 @ rn6
Exon Skipping
Gene
ENSRNOG00000003777 | Chrne
Description
cholinergic receptor nicotinic epsilon subunit [Source:RGD Symbol;Acc:2353]
Coordinates
chr10:57238946-57239661:-
Coord C1 exon
chr10:57239475-57239661
Coord A exon
chr10:57239285-57239394
Coord C2 exon
chr10:57238946-57239205
Length
110 bp
Sequences
Splice sites
3' ss Seq
AGCGCTTGGTGTCGCCTTAGCAG
3' ss Score
2.16
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
ATTTTATTAGAGCTACTGCCGCGCCTCCTCGGCTTGAGCCCACCCCCAGAGGATCCCGGAGCTGCCTCACCAGCGAGGCGTGCCTCATCTGTGGGCATTCTGCTTAGAGCGGAGGAGCTCATCTTGAAAAAGCCGCGGAGCGAACTCGTGTTTGAGGGACAGAGGCATCGGCATGGAACTTGGACCG
Seq A exon
CAGCCGCCCTCTGCCAGAACCTGAGTGCTGCAGCCCCTGAAGTCCGCTGCTGTGTGGATGCTGTGAACTTTGTGGCTGAGAGCACAAGGGACCAGGAAGCCACTGGAGAG
Seq C2 exon
GAACTGTCTGACTGGGTGCGTATGGGGAAGGCCCTCGACAATGTCTGTTTTTGGGCAGCGTTGGTGCTCTTCAGCGTCGGTTCTACGCTCATCTTCCTTGGAGGTTACTTCAACCAAGTTCCTGATCTCCCCTACCCACCGTGCATCCAACCATGAGCCTGCACCAGGACCCACCTCATCCCCACCCCCCAAGAAAGAGATTTTGAAAACAGGCTGCTGACAATAAATCTGGTTTGTGAACTTGCAGGAGAGGTTGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003777_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=0.054 C2=0.020
Domain overlap (PFAM):
C1:
PF0293211=Neur_chan_memb=FE(27.1=100)
A:
PF0293211=Neur_chan_memb=FE(15.7=100)
C2:
PF0293211=Neur_chan_memb=PD(13.5=59.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTATTAGAGCTACTGCCGCGC
R:
CAACGCTGCCCAAAAACAGAC
Band lengths:
247-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]