DreEX6012347 @ danRer10
Exon Skipping
Gene
ENSDARG00000034307 | chrne
Description
cholinergic receptor, nicotinic, epsilon [Source:ZFIN;Acc:ZDB-GENE-040808-32]
Coordinates
chr5:37839946-37842564:-
Coord C1 exon
chr5:37842360-37842564
Coord A exon
chr5:37841136-37841269
Coord C2 exon
chr5:37839946-37841048
Length
134 bp
Sequences
Splice sites
3' ss Seq
TTGCATATGTCTCCCTCTAGTGG
3' ss Score
8.15
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
Exon sequences
Seq C1 exon
ATTTTCCTAGAAGTGGTCCCTCGTTATCTTGGCATGGCCCCCTTTGTGGATGAGGGGGACCAGGGTGGGGTGTATGAAATGAGGGAGAGGCGACGGAGTTCATTTGGGCTCATGCAGAGGGCTGAGGAATATGTTCTGAAACAGCCACGCAGTGAGATGATGTTTGATAAACAAAGAGAGAGACATGGACTCATGCGCACAATTG
Seq A exon
TGGATGAAATTGATGTGAGCAGTACCGCAAACCTCTACAAGAGTCTGGCAAAGACGGCCCCAGAAATAAAAGAGTGTGTGGATGCCTGTAACTTCATTGCTGAATCCACCAAGCAGCAGAATGACACTGGATCG
Seq C2 exon
GAGATGGAGAGTTGGGTGCTGATTGGTAAGATGATTGACAAGGTTTGTTTTTGGGCGGCCATCTCTCTATTCTCAATTGGCACCATTGCTATCTTCCTCATGGGTCACTACAACCAAGCACCTGAGTACCCATTTGCTTGGGAGAACAAAAAGTATGTGCCTGAGTAGTGCTCTGAAAACTGGACAGATTTTTAAGTAAGTCAGTCAGTAAGTTTTATAGCTCGGGTTAGAGTACAGCAAGCTGCACATGATGTGAACAATATCATCTGACTTGATATATGATTTTGTCTTATATTTAATATTAGGGTCTATGGGTGTTGCATGTCTAAACTTTTTTGTACTAATTATTATTTACACTACTGGGGTTTTTACAGAAATGTAATTTTTTTTTCAAACATTACAAAAACATTATTTTCAAACATTCATTCGTTCATTTTCTTTTCGGCTTAGTCTCTTTAATAATCTGGGGTCGCCACAGCAAAATTAACCGCCAACTTATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000034307-'12-14,'12-13,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.022 C2=0.000
Domain overlap (PFAM):
C1:
PF0293211=Neur_chan_memb=FE(28.0=100)
A:
PF0293211=Neur_chan_memb=FE(18.1=100)
C2:
PF0293211=Neur_chan_memb=PD(12.8=55.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCCCTCGTTATCTTGGCA
R:
GATGGCCGCCCAAAAACAAAC
Band lengths:
255-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]