BtaEX0009021 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004908 | CHRNE
Description
Bos taurus cholinergic receptor, nicotinic, epsilon (muscle) (CHRNE), mRNA. [Source:RefSeq mRNA;Acc:NM_174272]
Coordinates
chr19:27122347-27123114:+
Coord C1 exon
chr19:27122347-27122533
Coord A exon
chr19:27122618-27122724
Coord C2 exon
chr19:27122842-27123114
Length
107 bp
Sequences
Splice sites
3' ss Seq
CCCCGGGTCGCCCCCACCAGCTA
3' ss Score
3.73
5' ss Seq
GAGGTGGGG
5' ss Score
4.41
Exon sequences
Seq C1 exon
GTGTTGCTGGAGCTGCTACCCCAGCTCCTGGGCTCCGGCGCGCCCCCCGAGATCCCCCGAGCTGCCTCGCCCCCAAGGAGGGCGTCGTCCCTGGGCCTCCTGCTCCGCGCGGAGGAGCTGATACTGAAAAAGCCGCGGAGCGAACTGGTATTTGAGCAGCAGAGGCACCGGCACGGAACCTGGACGG
Seq A exon
CTACCCTCTGCCAGAACCTGGGCGCTGCCGCCCCCGAGATCCGCTGCTGTGTGGATGCCGTGAACTTCGTGGCTTCAAGCACTCGGGACCAGGAGGCCACTGGCGAG
Seq C2 exon
GAGGTGTCCGACTGGGTGCGCATGGGGAAGGCCCTTGACAGCATCTGCTTCTGGGCTGCTCTGGTGCTCTTCCTCGTGGGCTCCAGCCTCATCTTCCTCGGGGCCTACTTCAACCGAGTGCCTCAGCTGCCCTACCCGCCATGTATGTAGACCTGAGGCCACAGCCACACCGACAAGAATTCCCACCCGTCTCCAGGAGGATATTTGAAAAACACCTTGCTACCACTGCTTTATTACTATCCTTTCCCACTGCCAATGATAAATCTGTATTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004908_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.063 A=0.056 C2=0.020
Domain overlap (PFAM):
C1:
PF0293211=Neur_chan_memb=FE(27.2=100)
A:
PF0293211=Neur_chan_memb=FE(15.4=100)
C2:
PF0293211=Neur_chan_memb=PD(13.6=62.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGATACTGAAAAAGCCGCG
R:
GGAATTCTTGTCGGTGTGGCT
Band lengths:
254-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development