Special

ENSG00000108556 @ hg38

Biotype
protein_coding
Gene Symbol
CHRNE
Description
cholinergic receptor nicotinic epsilon subunit [Source:HGNC Symbol;Acc:HGNC:1966]
Coordinates
chr17:4897774-4903074:-
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Exon Skipping
115
chr17:4900793-4900907
-
72.11
79.41
0
Exon Skipping
187
chr17:4899198-4899384
-
97.45
10.62
0
Intron Retention
109
chr17:4898892-4899000
-
51.11
100
0
Intron Retention
126
chr17:4902495-4902620
-
78.75
100
0
Intron Retention
123
chr17:4902327-4902449
-
77.63
100
0
Intron Retention
129
chr17:4902088-4902216
-
83.01
100
0
Intron Retention
306
chr17:4901626-4901931
-
87.29
100
0
Intron Retention
334
chr17:4901191-4901524
-
78.93
96.88
0
Intron Retention
82
chr17:4900908-4900989
-
58.02
94.44
0
Intron Retention
83
chr17:4899385-4899467
-
10.83
31.18
0
Intron Retention
254
chr17:4902764-4903017
-
92.69
45.45
0
Intron Retention
1210
chr17:4899583-4900792
-
65.47
93.58
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000014609 Chrne 1-to-1
Mouse mm9 ENSMUSG00000014609 Chrne 1-to-1
Rat rn6 ENSRNOG00000003777 Chrne 1-to-1
Cow bosTau6 ENSBTAG00000004908 CHRNE 1-to-1
Chicken galGal3 ENSGALG00000007899 F1NJ26_CHICK 2-to-1
Zebrafish danRer10 ENSDARG00000034307 chrne 1-to-1
Fruitfly dm6 FBgn0000038 nAChRbeta1 4-to-1