MmuALTA0004666-7/7 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000042401 | Crtac1
Description
cartilage acidic protein 1 [Source:MGI Symbol;Acc:MGI:1920082]
Coordinates
chr19:42283137-42284266:-
Coord C1 exon
chr19:42284123-42284266
Coord A exon
chr19:42283238-42283680
Coord C2 exon
chr19:42283137-42283237
Length
443 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TTTTGTTTGTTTTTTTGCAGCTC
3' ss Score
11.1
Exon sequences
Seq C1 exon
ACACCAATGAATGCATCCAGTTCCCATTTGTGTGCCCTCGAGACAAACCCGTATGTGTCAACACCTATGGAAGCTACAGGTGCCGGACCAATAAAAGATGCAATCGGGGCTATGAACCCAATGAAGACGGCACAGCCTGTGTGG
Seq A exon
CTCAAGTGGCCTTTTTAGGTGGGTACTCATCGGCTGCCTTTAGACTCTCTGAGCCTCTCTCTCAGGCCTCGTATCTTTCTCTAGGCCTGGGACTTTGCCTTCAGTTATATGCACTTTAAATCCCATCAATAAAGGAAAAAAAAATCTAACAACCTTTGTGGAAAACTATATCTCTCCTGCTGCCTACCTCTCTCCACACCCCATAGATCCCGCCATGTGCTCCTTCGAACGGACAGCAGGGGTGGCCATCTTTGAAAAGGGAAGTTTGGGAGATACTGATGGGACCTTAGTTGTTGGTGAAGCCTTTCTTTGCATGTTTTCTGAGAAAACAGAAAAAGGAAAACTATCTCCTCTACCCCACCCCTCCTTCCGTGAGAAGAACCAAGAGAGTCCAGTCATTTCTGTATCTTCGTGAGCTTCTTCTTGTTTTGCCCTTGACAAAG
Seq C2 exon
ATGGCTCCTGGGTGGTTGCTGGCTCGGTTGATTCAGTAATGTATCCTGTGCCTGCTGATCCGGCCTGTGCTGCTGCTGCTGCTTTGTACAACCTGATTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042401-26-34,26-33,26-32,26-31,26-30,26-29,26-28-7/7
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.216 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.9)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCAATGAATGCATCCAGT
R:
AGGTTGTACAAAGCAGCAGCA
Band lengths:
238-681
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types