MmuALTA0007430-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000028034 | Fubp1
Description
far upstream element (FUSE) binding protein 1 [Source:MGI Symbol;Acc:MGI:1196294]
Coordinates
chr3:151880373-151880848:+
Coord C1 exon
chr3:151880373-151880412
Coord A exon
chr3:151880796-151880798
Coord C2 exon
chr3:151880799-151880848
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAG
5' ss Score
7.98
3' ss Seq
TAGTTTCTGTTCTTTCTTAGCAG
3' ss Score
5.08
Exon sequences
Seq C1 exon
CTTTTGGAGCACAGTTACCTCCAATGCATCAGCAGCAAAG
Seq A exon
CAG
Seq C2 exon
ATCTGTAATGACAGAAGAATACAAAGTCCCAGATGGGATGGTCGGATTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028034-4-6,4-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.509
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0001324=KH_1=PU(20.6=72.2)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGAGCACAGTTACCTCCA
R:
AAATCCGACCATCCCATCTGG
Band lengths:
87-90
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: