HsaALTA0003495-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000162613 | FUBP1
Description
far upstream element (FUSE) binding protein 1 [Source:HGNC Symbol;Acc:4004]
Coordinates
chr1:78432733-78433350:-
Coord C1 exon
chr1:78433311-78433350
Coord A exon
chr1:78432783-78432785
Coord C2 exon
chr1:78432733-78432782
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAG
5' ss Score
7.98
3' ss Seq
TGCTTTCTGTTATTTCTTAGCAG
3' ss Score
6.82
Exon sequences
Seq C1 exon
CTTTTGGAACACAGTTACCACCGATGCATCAGCAGCAAAG
Seq A exon
CAG
Seq C2 exon
ATCTGTAATGACAGAAGAATACAAAGTTCCAGATGGAATGGTTGGATTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162613-4-5,4-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.521
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PU(20.6=40.6)
A:
NA
C2:
PF0001324=KH_1=PU(20.6=72.2)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGAACACAGTTACCACCGA
R:
TGAATCCAACCATTCCATCTGGA
Band lengths:
87-90
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)