MmuALTA0007430-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000028034 | Fubp1
Description
far upstream element (FUSE) binding protein 1 [Source:MGI Symbol;Acc:MGI:1196294]
Coordinates
chr3:152217409-152217884:+
Coord C1 exon
chr3:152217409-152217448
Coord A exon
chr3:152217832-152217834
Coord C2 exon
chr3:152217835-152217884
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAG
5' ss Score
7.98
3' ss Seq
TAGTTTCTGTTCTTTCTTAGCAG
3' ss Score
5.08
Exon sequences
Seq C1 exon
CTTTTGGAGCACAGTTACCTCCAATGCATCAGCAGCAAAG
Seq A exon
CAG
Seq C2 exon
ATCTGTAATGACAGAAGAATACAAAGTCCCAGATGGGATGGTCGGATTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028034-14-12,14-11,14-10-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.512
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0001324=KH_1=PU(20.6=72.2)
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGAGCACAGTTACCTCCA
R:
AAATCCGACCATCCCATCTGG
Band lengths:
87-90
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types