MmuINT0066457 @ mm10
Intron Retention
Gene
ENSMUSG00000028034 | Fubp1
Description
far upstream element (FUSE) binding protein 1 [Source:MGI Symbol;Acc:MGI:1196294]
Coordinates
chr3:152217409-152217884:+
Coord C1 exon
chr3:152217409-152217448
Coord A exon
chr3:152217449-152217834
Coord C2 exon
chr3:152217835-152217884
Length
386 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAG
5' ss Score
7.98
3' ss Seq
TTTCTGTTCTTTCTTAGCAGATC
3' ss Score
10.05
Exon sequences
Seq C1 exon
CTTTTGGAGCACAGTTACCTCCAATGCATCAGCAGCAAAG
Seq A exon
GTATAGTCAAAACTTTTAAAGCTACTTTGCAAGTCTTAGTTGGATTGTATGTACAGCCAAGTTAGTCTATAATGCAAATGTCTGCATACCATTTTGTATGTGTGGTTTACTTCTGTAAACCACATTGGGAAAATGGTATAGAAACATTGTTAATTTGGGAAAACAGGTTGAAATTGACGCATTTCAGAAGAGGTAAAATAAATGTTAAAGTGGCATTCGCTTTGACAGGTGTTCAGTTTCCTGCCCTGCTCACACATGCTGCCTCATTTAAGAACCTGGCTGGGCTACTGGGAGACTTTAAGATTGGGTTTATTAGACTGCTTTTATGTGTATATGTACATTATTTTTCTGTGAGGAAAATGTTAGTTTCTGTTCTTTCTTAGCAG
Seq C2 exon
ATCTGTAATGACAGAAGAATACAAAGTCCCAGATGGGATGGTCGGATTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028034:ENSMUST00000166984:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.506
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0001324=KH_1=PU(20.6=72.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types