GgaINT0039153 @ galGal3
Intron Retention
Gene
ENSGALG00000008939 | FUBP1
Description
NA
Coordinates
chr8:19594535-19595395:+
Coord C1 exon
chr8:19594535-19594574
Coord A exon
chr8:19594575-19595345
Coord C2 exon
chr8:19595346-19595395
Length
771 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
GGATTTAATCTTCTCTACAGGTC
3' ss Score
8.86
Exon sequences
Seq C1 exon
CTTTTGGAAATCAGCTACCACCAATGCATCAACAACAAAG
Seq A exon
GTAAGAGTTAACGCTACATCTTATGTAAAGTTTTCCACTGTAATGAAAGAAAGCAGTTTCAGGAAATTCTTTTGGAAAAGTGATATCAATGCATAAAACAGTTATTTCGTGTTTGTGTCATACATTGAAATTTAGCTGCAGCAGTCCCACGCCAAACCTTTAAAATGCATCTGGTAATATCTTGCTGTCTGTCTTTTCTTGGCAGCCAATGCTGTGCATCAAAAATAGTAGGAGGAAAATGAATTGCTTTTCCTTAGTAGTGTTACCGAAAGTTGGAAGTAGATCTAAGGGGAAAGGAGCTTGGTGCTGTCTTAAAAACAGAAAAGTCATGGATTTAAAAAAATAAATAGGGGTAGACTTAACACAGCTGATCATTCAGTCAGCTACTTTGATACAAGTTAAGTTTTCATTACTTGTCCCTAAACAAATGCATCCAAAGTATTCTGTCCTTTGCTGTTGAGGGACACATAGATCAAAATCTTTAATACACTGGCCTTTTCTGTACCCCACACCTGTTAATAAAGAGAATAAAAGATAGAATCAAAATCAATTAATTCATGTTAAATTTGTTCTGGTCACATTTGAATATTCTTAGTTTGTTTGCCACTATGCTTGCATATGACTTTTAAAGTTAGTGAGAGGCATGAATGCCAAGTCAATGGTTGGGCACTGACTTCCTTCCTCTAGTTTAATGGGATGTTATCTCTAAATTTAGTGCTTCTTTGGTTTCTGTATGCTCATTGTCTTTGTTGGATTTAATCTTCTCTACAG
Seq C2 exon
GTCTGTGATGACAGAGGAGTACAAAGTTCCAGATGGAATGGTTGGATTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008939:ENSGALT00000014525:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0001324=KH_1=PU(20.6=72.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]