GgaINT0039153 @ galGal4
Intron Retention
Gene
ENSGALG00000008939 | FUBP1
Description
far upstream element-binding protein 1 [Source:RefSeq peptide;Acc:NP_001006535]
Coordinates
chr8:17794304-17795164:+
Coord C1 exon
chr8:17794304-17794343
Coord A exon
chr8:17794344-17795114
Coord C2 exon
chr8:17795115-17795164
Length
771 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
GGATTTAATCTTCTCTACAGGTC
3' ss Score
8.86
Exon sequences
Seq C1 exon
CTTTTGGAAATCAGCTACCACCAATGCATCAACAACAAAG
Seq A exon
GTAAGAGTTAACGCTACATCTTATGTAAAGTTTTCCACTGTAATGAAAGAAAGCAGTTTCAGGAAATTCTTTTGGAAAAGTGATATCAATGCATAAAACAGTTATTTCGTGTTTGTGTCATACATTGAAATTTAGCTGCAGCAGTCCCACGCCAAACCTTTAAAATGCATCTGGTAATATCTTGCTGTCTGTCTTTTCTTGGCAGCCAATGCTGTGCATCAAAAATAGTAGGAGGAAAATGAATTGCTTTTCCTTAGTAGTGTTACCGAAAGTTGGAAGTAGATCTAAGGGGAAAGGAGCTTGGTGCTGTCTTAAAAACAGAAAAGTCATGGATTTAAAAAAATAAATAGGGGTAGACTTAACACAGCTGATCATTCAGTCAGCTACTTTGATACAAGTTAAGTTTTCATTACTTGTCCCTAAACAAATGCATCCAAAGTATTCTGTCCTTTGCTGTTGAGGGACACATAGATCAAAATCTTTAATACACTGGCCTTTTCTGTACCCCACACCTGTTAATAAAGAGAATAAAAGATAGAATCAAAATCAATTAATTCATGTTAAATTTGTTCTGGTCACATTTGAATATTCTTAGTTTGTTTGCCACTATGCTTGCATATGACTTTTAAAGTTAGTGAGAGGCATGAATGCCAAGTCAATGGTTGGGCACTGACTTCCTTCCTCTAGTTTAATGGGATGTTATCTCTAAATTTAGTGCTTCTTTGGTTTCTGTATGCTCATTGTCTTTGTTGGATTTAATCTTCTCTACAG
Seq C2 exon
GTCTGTGATGACAGAGGAGTACAAAGTTCCAGATGGAATGGTTGGATTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008939:ENSGALT00000014525:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.133
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0001324=KH_1=PU(20.6=86.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]