MmuALTA0007600-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000026829 | Gbgt1
Description
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 [Source:MGI Symbol;Acc:MGI:2449143]
Coordinates
chr2:28498376-28502117:+
Coord C1 exon
chr2:28498376-28498441
Coord A exon
NA
Coord C2 exon
chr2:28502067-28502117
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTTGTAAGT
5' ss Score
8
3' ss Seq
CTCTCTCTCTCTGCCACCAGCAA
3' ss Score
8.97
Exon sequences
Seq C1 exon
GAAGTTTATCAAGGACTGGCTGCTGGTCTCCTACATACCCTATTACCTCCCCTGCCCAGAGTTCTT
Seq A exon
NA
Seq C2 exon
CAACATGAAGCTGCCCTTCAGGAAGGAGAAACCGTTGCAGCCTGTGACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026829-3-6,3-5-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=FE(6.5=100)
A:
NA
C2:
PF034148=Glyco_transf_6=FE(5.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTTTATCAAGGACTGGCTGCT
R:
TGTGTCACAGGCTGCAACG
Band lengths:
116-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types