MmuALTA0010630-3/5 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000025409 | Mbd6
Description
methyl-CpG binding domain protein 6 [Source:MGI Symbol;Acc:MGI:106378]
Coordinates
chr10:127283029-127283444:-
Coord C1 exon
chr10:127283392-127283444
Coord A exon
chr10:127283089-127283162
Coord C2 exon
chr10:127283029-127283088
Length
74 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
CCTTTACTATCCAAATGTAGAAG
3' ss Score
5.65
Exon sequences
Seq C1 exon
GTGCCCCCGGGGATAGTCAGAAAGTCTCGTCGTGGCCGGAGGAGAAAATACAA
Seq A exon
AAGTCTCTCACCAGCCTTCTGAAATTCACCTGGTGCTCGGGAGCTGCTCCTGATCATCTGTGCCCTTATTGCAG
Seq C2 exon
CCCTGCCCGGAACAGCAGCAGCTCCCGCCAGGACGTGACCTTGGAACCCAGCCCTACAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025409-17-29,17-28,17-27,17-26,17-25-3/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.957 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCGGGGATAGTCAGAAAGT
R:
GTTGTAGGGCTGGGTTCCAAG
Band lengths:
109-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types