RnoALTA0023430-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000006209 | Mbd6
Description
methyl-CpG binding domain protein 6 [Source:RGD Symbol;Acc:1311050]
Coordinates
chr7:70572536-70572963:-
Coord C1 exon
chr7:70572911-70572963
Coord A exon
chr7:70572603-70572678
Coord C2 exon
chr7:70572536-70572602
Length
76 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
CCTTTACTGTCCAAATGTAGAAA
3' ss Score
7.03
Exon sequences
Seq C1 exon
GTGTCCCCGGGGATAGTCAGAAAGTCTCGTCGTGGCCGGAGGAGAAAATACAA
Seq A exon
AAAGTCTCTCACCCAGCCTTGGGAAATTCACCTGGTGCTTGGGAGCTGTTCCTGATCATCTGTGCCCTTATTGCAG
Seq C2 exon
CCCTGCCCGGAACAGCAGCAGCAGCTCCCGCCAGGACGTTACCTTGGAGCCCAGCCCTACAACCCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006209-12-19,12-18-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCGGGGATAGTCAGAAAGT
R:
TTGTAGGGCTGGGCTCCAAG
Band lengths:
111-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]