MmuALTA0013188-4/4 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000027088 | Phospho2
Description
phosphatase, orphan 2 [Source:MGI Symbol;Acc:MGI:1920623]
Coordinates
chr2:69790286-69792474:+
Coord C1 exon
chr2:69790286-69790321
Coord A exon
chr2:69792337-69792392
Coord C2 exon
chr2:69792393-69792474
Length
56 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
AATATTTCTATTAATTTTAGGAG
3' ss Score
7.38
Exon sequences
Seq C1 exon
GTTTTCTATCAGAGATGTTCCACTGTAATAATGCTG
Seq A exon
GAGTTAAAAAGTCTTTGTTCCTTTGCTGCATATCAGAGCAATTTCTCTGCATACAG
Seq C2 exon
AACTGGAGTAATGTTTACAAACAGCTGGCAAATTGAAGACTGCAGTGGCCTAACCTCTGTGCTGAAGTAGCATTAATTGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027088-3-6,3-5,3-4,3-3-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTATCAGAGATGTTCCACTGT
R:
CTTCAGCACAGAGGTTAGGCC
Band lengths:
101-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types