RnoALTA0029027-3/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000007979 | Phospho2
Description
phosphatase, orphan 2 [Source:RGD Symbol;Acc:1359274]
Coordinates
chr3:56031519-56033576:+
Coord C1 exon
chr3:56031519-56031552
Coord A exon
chr3:56033422-56033477
Coord C2 exon
chr3:56033478-56033576
Length
56 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
AATACTTTTATTAATTTTAGGAA
3' ss Score
8.66
Exon sequences
Seq C1 exon
GTTTTCTATCAGATGTTCCACTCTAATAATGCTG
Seq A exon
GAATTAAGAAGTCTTCGTTCCTTTGCTACCTATCAGAGCAATTTCTCTGCATACAG
Seq C2 exon
AAATGAAGTAATATTTAAAAACAACTGGCAAACTGAAGATTGCAGTAACCTAAGCTCTGTGCTGAAGTAAGATTAATTGGACTGCAACTACCAGTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007979-3-3,3-2,3-1-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGATGTTCCACTCTAATAATGCTG
R:
CCAAACTGGTAGTTGCAGTCCA
Band lengths:
125-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]