MmuALTA0013651-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000004565 | Pnpla6
Description
patatin-like phospholipase domain containing 6 [Source:MGI Symbol;Acc:MGI:1354723]
Coordinates
chr8:3515384-3516568:+
Coord C1 exon
chr8:3515384-3515556
Coord A exon
NA
Coord C2 exon
chr8:3516510-3516568
Length
0 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
3' ss Seq
CCTATCCTTCTGTCTAGCAGTAC
3' ss Score
4.71
Exon sequences
Seq C1 exon
AAAGGTGCCGCGTCTGAGGCAGCGGGCAGAAAACTAGGGGTGTTGGCCGAAGCTGGGTGGACCTGGTTGCAGCTCCTGAATGGTACGAGTTTCCATCGACCGAGCAAAGGTGTCCCTTCGAGGACTGTTAGAGAGCTTCAGCTTTGCCCCGGATCGATTTGTCCTGATTCCGG
Seq A exon
NA
Seq C2 exon
TACCCCTCTAGACGCTCTCACCCCAACCCCGGCGAATGGAGGAGTCACTCCAGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004565-1-2,1-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.375
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGACCGAGCAAAGGTGTC
R:
TTGGGGTGAGAGCGTCTAGAG
Band lengths:
106-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types