MmuEX0036058 @ mm10
Exon Skipping
Gene
ENSMUSG00000004565 | Pnpla6
Description
patatin-like phospholipase domain containing 6 [Source:MGI Symbol;Acc:MGI:1354723]
Coordinates
chr8:3515384-3516749:+
Coord C1 exon
chr8:3515384-3515556
Coord A exon
chr8:3516507-3516568
Coord C2 exon
chr8:3516681-3516749
Length
62 bp
Sequences
Splice sites
3' ss Seq
GCCCCTATCCTTCTGTCTAGCAG
3' ss Score
6.39
5' ss Seq
AAGGTATCT
5' ss Score
7.56
Exon sequences
Seq C1 exon
AAAGGTGCCGCGTCTGAGGCAGCGGGCAGAAAACTAGGGGTGTTGGCCGAAGCTGGGTGGACCTGGTTGCAGCTCCTGAATGGTACGAGTTTCCATCGACCGAGCAAAGGTGTCCCTTCGAGGACTGTTAGAGAGCTTCAGCTTTGCCCCGGATCGATTTGTCCTGATTCCGG
Seq A exon
CAGTACCCCTCTAGACGCTCTCACCCCAACCCCGGCGAATGGAGGAGTCACTCCAGCCAAAG
Seq C2 exon
GACTGCAGGCTACAAGACCTGCTACCTAGTCCGAAACAATCGATGGAGGCCCCACTGCAAACCGGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004565-'1-4,'1-1,5-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.375 C2=0.238
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF094725=MtrF=PU(33.3=52.2)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCATCGACCGAGCAAAGG
R:
GGGGCCTCCATCGATTGTTTC
Band lengths:
137-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types