RnoEX0067709 @ rn6
Exon Skipping
Gene
ENSRNOG00000000977 | Pnpla6
Description
patatin-like phospholipase domain containing 6 [Source:RGD Symbol;Acc:1564611]
Coordinates
chr12:2066835-2070158:+
Coord C1 exon
chr12:2066835-2068987
Coord A exon
chr12:2069923-2069979
Coord C2 exon
chr12:2070090-2070158
Length
57 bp
Sequences
Splice sites
3' ss Seq
CCTATCCTTCTGTCTAGCAGTAC
3' ss Score
4.71
5' ss Seq
AAGGTATCT
5' ss Score
7.56
Exon sequences
Seq C1 exon
GATGATTGCCACTAGACTTTATCCCCATGTACTGCTGGGACCCCAGCTTATTTATTTTTAGAATTCGCTTTAAAAGATCTGCTTCTGACAGGCCTTGTGAGGGCTTGGGCAGATCGAATCGGACACTGGGGAAGGGAGGGCATGGAGGGTGGCTGTTAAATAAAAGGGAACATAAATGCGGTGGTCTAATTTGTAACTGGTGAGGCAGCCCTTTCATAAATTGTCAGCTCCTTTAAGAGGCCGCCACACTAGGCATGGCTGGCGCAGTGCGACCTTCCAACCATGGCGGGAGGCGGGGATGGGGCGTGCCCTGCAGCAGAATAATTTAAAGGTGCCGCGTCCGAGGCGGCGGACAGAAAACTAGGGGTGTTGGCCGACGCTGGGTGGACCTGGTTGCAGCTCCTGAGTGGTCCGAGTTTCCATTGATGGAGCAAAGGTGTTCCTTCGAGGACCATTAGCAAGCTTCGGCTTTGCCCCTGATCGATTTGTCCTGATTCCGG
Seq A exon
TACCCCCTCTAGACGCTCTCACCCCAACCCCGGCGGATGGAGTCACTCCTGCCAAAG
Seq C2 exon
GACTGCAGGCTACCAGACCTGCTCCCTAGTCCGAAACAATCAATGGAGGCCCCACTGCAAACCGGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000977_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.217
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000001290fB8507
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGAGTGGTCCGAGTTTCC
R:
TTTCGGACTAGGGAGCAGGTC
Band lengths:
136-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]