MmuALTA0014286-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000015476 | Prrt1
Description
proline-rich transmembrane protein 1 [Source:MGI Symbol;Acc:MGI:1932118]
Coordinates
chr17:34767128-34768116:+
Coord C1 exon
chr17:34767128-34767228
Coord A exon
NA
Coord C2 exon
chr17:34767901-34768116
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
CACCCGACCCTTATCTGCAGGAG
3' ss Score
8.13
Exon sequences
Seq C1 exon
CCCCGGCTGCTTCACAAGTACAAGGATTACAGGCATGAACCACTATGCCTAGTCCCAGAAGCTTTGTCATGGACCTTAACGGAGGCCCATGAGATTCCCAG
Seq A exon
NA
Seq C2 exon
GAGACTCGCTTCGAGGGTCCACTTCCCCCACCACCGCCTGCGGCCGCCGCCCCGCCCCCACCAGCGCCTGCCCCGACGGCCCAAGCCCCGGGCTTCGTGGTTCCCACGCACGCGGGGGCGGTGGGCACGTTGCCGCTGGGGGGCTACGTGGCGCCGGGCTACCCGCTGCAGCTGCAGCCGTGCACTGCTTATGTCCCTGTGTATCCGGTGGGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015476-1-3,1-2-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.800
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGCTGCTTCACAAGTACAA
R:
CCACCGGATACACAGGGACAT
Band lengths:
310-633
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: